MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_AP023309 Location: 847774..859099 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4578 Replicon: chromosome
Accession: NZ_AP023309 Location: 847774..859099 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4578 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5680_RS04065 (843220) | 843220..844318 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| K5680_RS04070 (844328) | 844328..845845 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| K5680_RS04075 (845921) | 845921..846466 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| K5680_RS04080 (846731) | 846731..847489 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| K5680_RS04090 (847774) | 847774..848580 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| K5680_RS04095 (848855) | 848855..849106 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| K5680_RS04100 (849283) | 849283..849510 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| K5680_RS04105 (849510) | 849510..849908 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| K5680_RS04110 (850714) | 850714..851250 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| K5680_RS04115 (851297) | 851297..851929 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| K5680_RS04120 (852648) | 852648..853232 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| K5680_RS04125 (853352) | 853352..855841 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| K5680_RS04130 (855882) | 855882..856625 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| K5680_RS04135 (856622) | 856622..857698 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| K5680_RS04140 (857842) | 857842..858354 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| K5680_RS04145 (858341) | 858341..859099 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| K5680_RS04150 (859309) | 859309..860169 | - | 861 | WP_000503684.1 | nickel/cobalt efflux protein RcnA | - |
| K5680_RS04155 (860291) | 860291..860563 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| K5680_RS04160 (860594) | 860594..861823 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| K5680_RS04165 (861965) | 861965..862420 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| K5680_RS04170 (862524) | 862524..863387 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |