MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_AP023304 Location: 881121..892446 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4551 Replicon: chromosome
Accession: NZ_AP023304 Location: 881121..892446 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4551 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5676_RS04265 (876567) | 876567..877665 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| K5676_RS04270 (877675) | 877675..879192 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| K5676_RS04275 (879268) | 879268..879813 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| K5676_RS04280 (880078) | 880078..880836 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| K5676_RS04290 (881121) | 881121..881927 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| K5676_RS04295 (882202) | 882202..882453 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| K5676_RS04300 (882630) | 882630..882857 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| K5676_RS04305 (882857) | 882857..883255 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| K5676_RS04310 (884061) | 884061..884597 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| K5676_RS04315 (884644) | 884644..885276 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| K5676_RS04320 (885995) | 885995..886579 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| K5676_RS04325 (886699) | 886699..889188 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| K5676_RS04330 (889229) | 889229..889972 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| K5676_RS04335 (889969) | 889969..891045 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| K5676_RS04340 (891189) | 891189..891701 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| K5676_RS04345 (891688) | 891688..892446 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| K5676_RS04350 (892656) | 892656..893510 | - | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| K5676_RS04355 (893632) | 893632..893904 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| K5676_RS04360 (893935) | 893935..895164 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| K5676_RS04365 (895306) | 895306..895761 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| K5676_RS04370 (895865) | 895865..896728 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |