MGE detailed information
MGE type: Prophage MGE length: 9575 bp
Accession: NZ_AP023299 Location: 312796..322370 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4334 Replicon: chromosome
Accession: NZ_AP023299 Location: 312796..322370 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4334 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5616_RS01400 (308348) | 308348..309202 | + | 855 | WP_000159621.1 | RNA polymerase sigma factor RpoH | - |
| K5616_RS01405 (309524) | 309524..310627 | + | 1104 | WP_001521443.1 | branched chain amino acid ABC transporter substrate-binding protein LivJ | - |
| K5616_RS01410 (310710) | 310710..310844 | - | 135 | WP_001517957.1 | hypothetical protein | - |
| K5616_RS01415 (310822) | 310822..311205 | - | 384 | WP_000778873.1 | aspartate 1-decarboxylase autocleavage activator PanM | - |
| K5616_RS01420 (311627) | 311627..312736 | + | 1110 | WP_000822976.1 | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | - |
| K5616_RS01425 (312796) | 312796..313722 | + | 927 | WP_000003007.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| K5616_RS01430 (313719) | 313719..314996 | + | 1278 | WP_000803766.1 | branched chain amino acid ABC transporter permease LivM | - |
| K5616_RS01435 (314993) | 314993..315760 | + | 768 | WP_000082083.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| K5616_RS01440 (315762) | 315762..316475 | + | 714 | WP_000416114.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
| K5616_RS01445 (316607) | 316607..316828 | + | 222 | WP_001520924.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| K5616_RS01450 (316825) | 316825..317193 | + | 369 | WP_001521773.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| K5616_RS01455 (317452) | 317452..318768 | + | 1317 | WP_000624747.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
| K5616_RS01460 (318832) | 318832..319719 | + | 888 | WP_000099303.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
| K5616_RS01465 (319716) | 319716..320561 | + | 846 | WP_000572196.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
| K5616_RS01470 (320563) | 320563..321633 | + | 1071 | WP_000907838.1 | PanD regulatory factor | VF |
| K5616_RS01475 (321630) | 321630..322370 | + | 741 | WP_000073548.1 | glycerophosphodiester phosphodiesterase | - |
| K5616_RS01480 (322383) | 322383..322799 | - | 417 | WP_000826041.1 | DUF2756 family protein | - |
| K5616_RS01485 (322925) | 322925..324667 | + | 1743 | WP_000805096.1 | gamma-glutamyltransferase | - |
| K5616_RS01490 (324712) | 324712..325746 | - | 1035 | WP_000675710.1 | phosphotriesterase | - |
| K5616_RS01495 (325743) | 325743..326714 | - | 972 | WP_001038948.1 | DMT family transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Prophage | TA25959 | NC_016810 | 3744081..3752732 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26059 | NC_016856 | 3736457..3745108 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297241 | UFRD01000002 | 3923220..3931871 | 0.002 |