MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_AP023294 Location: 847806..859131 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4261 Replicon: chromosome
Accession: NZ_AP023294 Location: 847806..859131 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4261 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5635_RS04065 (843252) | 843252..844350 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| K5635_RS04070 (844360) | 844360..845877 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| K5635_RS04075 (845953) | 845953..846498 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| K5635_RS04080 (846763) | 846763..847521 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| K5635_RS04090 (847806) | 847806..848612 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| K5635_RS04095 (848887) | 848887..849138 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| K5635_RS04100 (849315) | 849315..849542 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| K5635_RS04105 (849542) | 849542..849940 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| K5635_RS04110 (850746) | 850746..851282 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| K5635_RS04115 (851329) | 851329..851961 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| K5635_RS04120 (852680) | 852680..853264 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| K5635_RS04125 (853384) | 853384..855873 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| K5635_RS04130 (855914) | 855914..856657 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| K5635_RS04135 (856654) | 856654..857730 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| K5635_RS04140 (857874) | 857874..858386 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| K5635_RS04145 (858373) | 858373..859131 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| K5635_RS04150 (859341) | 859341..860207 | - | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| K5635_RS04155 (860329) | 860329..860601 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| K5635_RS04160 (860632) | 860632..861861 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| K5635_RS04165 (862003) | 862003..862458 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| K5635_RS04170 (862562) | 862562..863425 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.001 |