MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_AP023290 Location: 879784..891109 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3844 Replicon: chromosome
Accession: NZ_AP023290 Location: 879784..891109 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3844 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5615_RS04260 (875230) | 875230..876328 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| K5615_RS04265 (876338) | 876338..877855 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| K5615_RS04270 (877931) | 877931..878476 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| K5615_RS04275 (878741) | 878741..879499 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| K5615_RS04285 (879784) | 879784..880590 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| K5615_RS04290 (880865) | 880865..881116 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| K5615_RS04295 (881293) | 881293..881520 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| K5615_RS04300 (881520) | 881520..881918 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| K5615_RS04305 (882724) | 882724..883260 | + | 537 | WP_001038506.1 | hypothetical protein | VF |
| K5615_RS04310 (883307) | 883307..883939 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| K5615_RS04315 (884658) | 884658..885242 | + | 585 | WP_001244638.1 | hypothetical protein | VF |
| K5615_RS04320 (885362) | 885362..887851 | + | 2490 | WP_000705483.1 | hypothetical protein | VF |
| K5615_RS04325 (887892) | 887892..888635 | + | 744 | WP_000798504.1 | hypothetical protein | VF |
| K5615_RS04330 (888632) | 888632..889708 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| K5615_RS04335 (889852) | 889852..890364 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| K5615_RS04340 (890351) | 890351..891109 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| K5615_RS04345 (891319) | 891319..892179 | - | 861 | WP_000503684.1 | nickel/cobalt efflux protein RcnA | - |
| K5615_RS04350 (892301) | 892301..892573 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| K5615_RS04355 (892604) | 892604..893833 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| K5615_RS04360 (893975) | 893975..894430 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| K5615_RS04365 (894534) | 894534..895397 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |