MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_AP023289 Location: 960525..971850 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3837 Replicon: chromosome
Accession: NZ_AP023289 Location: 960525..971850 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3837 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5612_RS04695 (955971) | 955971..957069 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| K5612_RS04700 (957079) | 957079..958596 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| K5612_RS04705 (958672) | 958672..959217 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| K5612_RS04710 (959482) | 959482..960240 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| K5612_RS04720 (960525) | 960525..961331 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| K5612_RS04725 (961606) | 961606..961857 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| K5612_RS04730 (962034) | 962034..962261 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| K5612_RS04735 (962261) | 962261..962659 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| K5612_RS04740 (963465) | 963465..964001 | + | 537 | WP_001038506.1 | Putative monooxygenase | VF |
| K5612_RS04745 (964048) | 964048..964680 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| K5612_RS04750 (965399) | 965399..965983 | + | 585 | WP_001244638.1 | hypothetical protein | VF |
| K5612_RS04755 (966103) | 966103..968592 | + | 2490 | WP_000705483.1 | Mannosylglucosyl-3-phosphoglycerate phosphatase | VF |
| K5612_RS04760 (968633) | 968633..969376 | + | 744 | WP_000798504.1 | Lipoyl synthase | VF |
| K5612_RS04765 (969373) | 969373..970449 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| K5612_RS04770 (970593) | 970593..971105 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| K5612_RS04775 (971092) | 971092..971850 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| K5612_RS04780 (972060) | 972060..972920 | - | 861 | WP_000503684.1 | nickel/cobalt efflux protein RcnA | - |
| K5612_RS04785 (973042) | 973042..973314 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| K5612_RS04790 (973345) | 973345..974574 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| K5612_RS04795 (974716) | 974716..975171 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| K5612_RS04800 (975275) | 975275..976138 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |