MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_AP023288 Location: 897307..908632 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3835 Replicon: chromosome
Accession: NZ_AP023288 Location: 897307..908632 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3835 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5610_RS04390 (892753) | 892753..893851 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| K5610_RS04395 (893861) | 893861..895378 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| K5610_RS04400 (895454) | 895454..895999 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| K5610_RS04405 (896264) | 896264..897022 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| K5610_RS04415 (897307) | 897307..898113 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| K5610_RS04420 (898388) | 898388..898639 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| K5610_RS04425 (898816) | 898816..899043 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| K5610_RS04430 (899043) | 899043..899441 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| K5610_RS04435 (900247) | 900247..900783 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| K5610_RS04440 (900830) | 900830..901462 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| K5610_RS04445 (902181) | 902181..902765 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| K5610_RS04450 (902885) | 902885..905374 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| K5610_RS04455 (905415) | 905415..906158 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| K5610_RS04460 (906155) | 906155..907231 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| K5610_RS04465 (907375) | 907375..907887 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| K5610_RS04470 (907874) | 907874..908632 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| K5610_RS04475 (908842) | 908842..909702 | - | 861 | WP_000503684.1 | nickel/cobalt efflux protein RcnA | - |
| K5610_RS04480 (909824) | 909824..910096 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| K5610_RS04485 (910127) | 910127..911356 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| K5610_RS04490 (911498) | 911498..911953 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| K5610_RS04495 (912057) | 912057..912920 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |