MGE detailed information
MGE type: Conjugative plasmid MGE length: 130952 bp
Accession: NZ_AP023232 Location: 1..130952 Organism: Escherichia coli strain YJ4 Replicon: plasmid pYJ4-a
Accession: NZ_AP023232 Location: 1..130952 Organism: Escherichia coli strain YJ4 Replicon: plasmid pYJ4-a
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS62_RS23520 () | 589..876 | + | 288 | WP_061856957.1 | hypothetical protein | - |
| HXS62_RS23525 () | 995..1816 | + | 822 | WP_061856956.1 | DUF945 domain-containing protein | - |
| HXS62_RS23530 () | 2112..2714 | - | 603 | WP_077878371.1 | hypothetical protein | VF |
| HXS62_RS23535 () | 3034..3417 | + | 384 | WP_061856954.1 | relaxosome protein TraM | - |
| HXS62_RS23540 () | 3604..4293 | + | 690 | WP_061856953.1 | conjugal transfer transcriptional regulator TraJ | - |
| HXS62_RS23545 () | 4392..4787 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| HXS62_RS23550 () | 4820..5182 | + | 363 | WP_039052460.1 | type IV conjugative transfer system pilin TraA | - |
| HXS62_RS23555 () | 5187..5498 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HXS62_RS23560 () | 5520..6056 | + | 537 | WP_176486942.1 | type IV conjugative transfer system protein TraE | - |
| HXS62_RS23565 () | 6098..6802 | + | 705 | WP_148998276.1 | type-F conjugative transfer system secretin TraK | - |
| HXS62_RS23570 () | 6802..8253 | + | 1452 | WP_176486943.1 | conjugal transfer protein TraB | - |
| HXS62_RS23575 () | 8222..8803 | + | 582 | WP_052273600.1 | conjugal transfer protein TraP | - |
| HXS62_RS23580 () | 8742..9110 | + | 369 | WP_071550054.1 | conjugal transfer protein TrbD | - |
| HXS62_RS23585 () | 9103..9354 | + | 252 | WP_039052465.1 | conjugal transfer protein TrbG | - |
| HXS62_RS23590 () | 9351..9866 | + | 516 | WP_039052466.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HXS62_RS23595 () | 10001..10222 | + | 222 | WP_001278685.1 | conjugal transfer protein TraR | - |
| HXS62_RS23600 () | 10382..13009 | + | 2628 | WP_001064265.1 | type IV secretion system protein TraC | - |
| HXS62_RS23605 () | 13006..13392 | + | 387 | WP_000099693.1 | type-F conjugative transfer system protein TrbI | - |
| HXS62_RS23610 () | 13389..14021 | + | 633 | WP_039052467.1 | type-F conjugative transfer system protein TraW | - |
| HXS62_RS23615 () | 14018..15010 | + | 993 | WP_000830835.1 | conjugal transfer pilus assembly protein TraU | - |
| HXS62_RS23620 () | 15019..15658 | + | 640 | Protein_21 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HXS62_RS23625 () | 15655..16035 | + | 381 | WP_039052469.1 | hypothetical protein | - |
| HXS62_RS23630 () | 16346..18133 | + | 1788 | WP_039052473.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HXS62_RS23635 () | 18160..18417 | + | 258 | WP_039023152.1 | conjugal transfer protein TrbE | - |
| HXS62_RS23640 () | 18410..19153 | + | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HXS62_RS23645 () | 19169..19516 | + | 348 | WP_001287894.1 | conjugal transfer protein TrbA | - |
| HXS62_RS23650 () | 19635..19919 | + | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HXS62_RS23655 () | 19906..20451 | + | 546 | WP_039052470.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HXS62_RS23660 () | 20381..20743 | + | 363 | WP_071550055.1 | P-type conjugative transfer protein TrbJ | - |
| HXS62_RS23665 () | 20743..22116 | + | 1374 | WP_039023150.1 | conjugal transfer protein TraH | - |
| HXS62_RS23670 () | 22113..23570 | + | 1458 | Protein_31 | conjugal transfer mating pair stabilization protein TraG | - |
| HXS62_RS23675 () | 23611..25151 | - | 1541 | Protein_32 | IS66 family transposase ISEc22 | Transposase |
| HXS62_RS23680 () | 25201..25548 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| HXS62_RS23685 () | 25545..25949 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| HXS62_RS23690 () | 26030..27397 | + | 1368 | Protein_35 | conjugal transfer protein TraG | - |
| HXS62_RS23695 () | 27416..27913 | + | 498 | WP_000605862.1 | entry exclusion protein | - |
| HXS62_RS23700 () | 27974..28638 | + | 665 | Protein_37 | transposase | - |
| HXS62_RS23705 () | 28654..29002 | + | 349 | Protein_38 | IS66 family transposase ISCro1 | Transposase |
| HXS62_RS23710 () | 29022..30597 | + | 1576 | Protein_39 | IS66 family transposase | - |
| HXS62_RS23715 () | 30660..31391 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| HXS62_RS23720 () | 31644..33842 | + | 2199 | WP_061856952.1 | type IV conjugative transfer system coupling protein TraD | - |
| HXS62_RS23725 () | 33851..34249 | - | 399 | WP_039023147.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| HXS62_RS23730 () | 34249..34476 | - | 228 | WP_039023146.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| HXS62_RS23735 () | 34558..39829 | + | 5272 | Protein_44 | Multifunctional conjugation protein TraI | Relaxase |
| HXS62_RS23740 () | 40105..41648 | + | 1544 | Protein_45 | IS21-like element ISEc12 family transposase | - |
| HXS62_RS23745 () | 41663..42410 | + | 748 | Protein_46 | IS21-like element ISEc12 family helper ATPase IstB | - |
| HXS62_RS23750 () | 42438..43184 | + | 747 | WP_052273601.1 | conjugal transfer pilus acetylase TraX | - |
| HXS62_RS23755 () | 43239..43799 | + | 561 | WP_001567328.1 | fertility inhibition protein FinO | - |
| HXS62_RS23760 () | 43930..44139 | + | 210 | WP_039023209.1 | hypothetical protein | - |
| HXS62_RS23765 () | 44551..45177 | + | 627 | WP_029702149.1 | hypothetical protein | - |
| HXS62_RS23770 () | 45329..45898 | + | 570 | WP_029702150.1 | DUF2726 domain-containing protein | - |
| HXS62_RS23775 () | 46273..46539 | + | 267 | WP_087757657.1 | hypothetical protein | - |
| - () | 46678..46739 | - | 62 | NuclAT_0 | - | - |
| - () | 46678..46739 | - | 62 | NuclAT_0 | - | - |
| - () | 46678..46739 | - | 62 | NuclAT_0 | - | - |
| - () | 46678..46739 | - | 62 | NuclAT_0 | - | - |
| HXS62_RS23780 () | 46726..46932 | + | 207 | WP_032215358.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HXS62_RS23785 () | 47216..47473 | + | 258 | WP_000083833.1 | replication regulatory protein RepA | - |
| HXS62_RS23790 () | 47709..47783 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| HXS62_RS23795 () | 47776..48604 | + | 829 | Protein_56 | incFII family plasmid replication initiator RepA | - |
| HXS62_RS23800 () | 49306..49446 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| HXS62_RS23805 () | 49872..50204 | + | 333 | WP_072134990.1 | CPBP family intramembrane metalloprotease | - |
| HXS62_RS23810 () | 50297..50554 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| HXS62_RS23815 () | 50487..50888 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| HXS62_RS23820 () | 51137..51553 | + | 417 | Protein_61 | IS1 family transposase | - |
| HXS62_RS23825 () | 51589..52134 | - | 546 | Protein_62 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HXS62_RS23830 () | 52200..52904 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HXS62_RS23835 () | 53127..53936 | + | 810 | WP_000161640.1 | hypothetical protein | - |
| HXS62_RS23840 () | 54077..55354 | - | 1278 | WP_000625667.1 | DUF2254 domain-containing protein | - |
| HXS62_RS23845 () | 55418..57415 | - | 1998 | WP_005032116.1 | choline BCCT transporter BetT | - |
| HXS62_RS23850 () | 57796..58035 | + | 240 | WP_000534857.1 | type II toxin-antitoxin system antitoxin RelB | - |
| HXS62_RS23855 () | 58035..58196 | + | 162 | Protein_68 | type II toxin-antitoxin system mRNA interferase RelE | - |
| HXS62_RS23860 () | 58286..58876 | + | 591 | WP_012477564.1 | plasmid pRiA4b ORF-3 family protein | - |
| HXS62_RS23865 () | 59013..59585 | + | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| HXS62_RS23870 () | 59622..61013 | + | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| HXS62_RS23875 () | 61046..61474 | + | 429 | Protein_72 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| HXS62_RS23880 () | 61793..62449 | - | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| HXS62_RS23885 () | 62844..63859 | + | 1016 | Protein_74 | IS3 family transposase ISEc36 | Transposase |
| HXS62_RS23890 () | 63902..66697 | - | 2796 | Protein_75 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HXS62_RS23895 () | 66711..67043 | + | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| HXS62_RS23900 () | 67090..67965 | - | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| HXS62_RS23905 () | 68221..69483 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| HXS62_RS23910 () | 69689..69883 | - | 195 | Protein_79 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HXS62_RS23915 () | 70047..70604 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| HXS62_RS23920 () | 70787..71647 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| HXS62_RS23925 () | 72264..73595 | + | 1332 | Protein_82 | group II intron reverse transcriptase/maturase | - |
| HXS62_RS23930 () | 73851..74132 | + | 282 | Protein_83 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HXS62_RS23935 () | 74224..74747 | - | 524 | Protein_84 | IS1 family transposase | - |
| HXS62_RS23940 () | 75274..75723 | + | 450 | WP_029702172.1 | hypothetical protein | - |
| HXS62_RS23945 () | 75939..76636 | + | 698 | Protein_86 | IS1 family transposase IS1R | Transposase |
| HXS62_RS23950 () | 76676..77416 | + | 741 | WP_029702141.1 | IS91 family transposase ISMno23 | Transposase |
| HXS62_RS23955 () | 77712..77980 | + | 269 | Protein_88 | type II toxin-antitoxin system ParD family antitoxin | - |
| HXS62_RS23960 () | 78096..78257 | + | 162 | WP_001440647.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HXS62_RS23965 () | 78324..78506 | + | 183 | WP_042004909.1 | hypothetical protein | - |
| HXS62_RS23970 () | 78627..79367 | + | 741 | WP_001586233.1 | tyrosine-type recombinase/integrase | - |
| HXS62_RS23975 () | 79690..80679 | - | 990 | WP_123002471.1 | RepB family plasmid replication initiator protein | - |
| HXS62_RS23980 () | 81567..81836 | + | 270 | WP_176486944.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| HXS62_RS23985 () | 81840..82370 | + | 531 | WP_000348883.1 | GNAT family N-acetyltransferase | Toxin Detail |
| HXS62_RS23990 () | 82371..82588 | + | 218 | Protein_95 | transposase | - |
| HXS62_RS23995 () | 82593..82868 | - | 276 | WP_001403920.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HXS62_RS24000 () | 82957..83187 | - | 231 | WP_001261274.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HXS62_RS24005 () | 83386..86007 | - | 2622 | WP_001586230.1 | hypothetical protein | - |
| HXS62_RS24010 () | 86398..86883 | + | 486 | WP_001403958.1 | hypothetical protein | - |
| HXS62_RS24015 () | 86912..87684 | + | 773 | Protein_100 | hypothetical protein | - |
| HXS62_RS24020 () | 87851..88984 | + | 1134 | WP_000545985.1 | DUF3800 domain-containing protein | - |
| HXS62_RS24025 () | 89018..89530 | - | 513 | WP_001586228.1 | hypothetical protein | - |
| HXS62_RS24030 () | 89817..91382 | + | 1566 | WP_001586226.1 | ATP-binding protein | - |
| HXS62_RS24035 () | 91439..92308 | - | 870 | WP_001586225.1 | hypothetical protein | - |
| HXS62_RS24040 () | 92310..93212 | - | 903 | WP_024187432.1 | hypothetical protein | - |
| HXS62_RS24045 () | 93213..93398 | - | 186 | WP_001586223.1 | hypothetical protein | - |
| HXS62_RS24050 () | 93691..94623 | - | 933 | WP_000991831.1 | hypothetical protein | - |
| HXS62_RS24055 () | 94627..95622 | - | 996 | WP_000246635.1 | hypothetical protein | - |
| HXS62_RS24060 () | 96300..96650 | + | 351 | WP_039052452.1 | hypothetical protein | - |
| HXS62_RS24065 () | 96720..97328 | + | 609 | WP_039052451.1 | hypothetical protein | - |
| HXS62_RS24070 () | 97435..97674 | + | 240 | WP_157916581.1 | resolvase | - |
| HXS62_RS24075 () | 97656..98156 | + | 501 | Protein_112 | IS91 family transposase ISAzo26 | Transposase |
| HXS62_RS24080 () | 98294..98569 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| HXS62_RS24085 () | 98563..99207 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
| HXS62_RS24090 () | 99436..100407 | + | 972 | WP_039052450.1 | plasmid segregation protein parM | - |
| HXS62_RS24095 () | 100412..100804 | + | 393 | WP_039052449.1 | plasmid partitioning/stability family protein | - |
| HXS62_RS24100 () | 100809..101899 | - | 1091 | Protein_117 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HXS62_RS24105 () | 102313..103293 | - | 981 | WP_039052448.1 | IS5 family transposase ISKpn26 | Transposase |
| HXS62_RS24110 () | 103636..105900 | - | 2265 | WP_039052447.1 | UvrD-helicase domain-containing protein | - |
| HXS62_RS24115 () | 105902..106678 | - | 777 | WP_039052454.1 | hypothetical protein | - |
| HXS62_RS24120 () | 107661..108780 | - | 1120 | Protein_121 | IS3 family transposase ISSen4 | Transposase |
| HXS62_RS24125 () | 108802..110019 | + | 1218 | WP_061856962.1 | IS4 family transposase IS10R | Transposase |
| HXS62_RS24130 () | 110029..110400 | - | 372 | WP_035689358.1 | Transposon Tn10 TetD protein | VF |
| HXS62_RS24135 () | 110533..111126 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| HXS62_RS24140 () | 111239..112444 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| HXS62_RS24145 () | 112526..113149 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| HXS62_RS24150 () | 113127..113813 | - | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| HXS62_RS24155 () | 113821..114207 | - | 387 | WP_000460651.1 | hypothetical protein | - |
| HXS62_RS24160 () | 114200..114520 | - | 321 | WP_000562370.1 | antibiotic biosynthesis monooxygenase | - |
| HXS62_RS24165 () | 114814..115512 | - | 699 | WP_001390273.1 | IS1 family transposase IS1A | Transposase |
| HXS62_RS24170 () | 115626..116279 | - | 654 | WP_039052615.1 | hypothetical protein | - |
| HXS62_RS24175 () | 116317..116673 | - | 357 | WP_039052614.1 | hypothetical protein | - |
| HXS62_RS24180 () | 116850..117299 | + | 450 | Protein_133 | hypothetical protein | - |
| HXS62_RS24185 () | 117838..118140 | + | 303 | WP_077878372.1 | antirestriction protein | - |
| HXS62_RS24190 () | 118189..118380 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| HXS62_RS24200 () | 119333..119562 | + | 230 | Protein_136 | hypothetical protein | - |
| HXS62_RS24205 () | 119614..120975 | + | 1362 | WP_039052595.1 | DUF3560 domain-containing protein | - |
| HXS62_RS24210 () | 121023..121586 | + | 564 | WP_001377760.1 | class I SAM-dependent methyltransferase | - |
| HXS62_RS24215 () | 121567..121919 | - | 353 | Protein_139 | pilus protein | - |
| HXS62_RS24220 () | 122280..123200 | + | 921 | WP_039052596.1 | aminoimidazole riboside kinase | - |
| HXS62_RS24225 () | 123368..124885 | + | 1518 | WP_039052597.1 | carbohydrate porin | - |
| HXS62_RS24230 () | 124946..126316 | + | 1371 | WP_000344915.1 | sucrose-specific PTS transporter subunit IIBC | - |
| HXS62_RS24235 () | 126316..127725 | + | 1410 | WP_039052598.1 | sucrose-6-phosphate hydrolase | - |
| HXS62_RS24240 () | 127751..128758 | + | 1008 | WP_001232702.1 | LacI family DNA-binding transcriptional regulator | - |
| HXS62_RS24245 () | 129222..129839 | - | 618 | Protein_145 | ISL3 family transposase ISEc38 | Transposase |
| HXS62_RS24250 () | 130012..130710 | + | 699 | Protein_146 | IS1 family transposase IS1R | Transposase |
| HXS62_RS24255 () | 130790..130921 | - | 132 | Protein_147 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|