MGE detailed information
MGE type: Genomic_island MGE length: 31881 bp
Accession: NC_017625 Location: 1096328..1128208 Organism: Escherichia coli DH1 Replicon: chromosome
Accession: NC_017625 Location: 1096328..1128208 Organism: Escherichia coli DH1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECDH1_RS05405 () | 1092512..1093780 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| ECDH1_RS05410 () | 1093800..1094777 | - | 978 | WP_000993126.1 | carbon starvation induced protein CsiD | - |
| ECDH1_RS25540 () | 1095113..1097365 | - | 2253 | Protein_1022 | hypothetical protein | - |
| ECDH1_RS25545 () | 1098751..1100124 | + | 1374 | Protein_1023 | DUF5507 domain-containing protein | - |
| ECDH1_RS23425 () | 1100488..1100697 | + | 210 | WP_072097107.1 | recombinase family protein | - |
| ECDH1_RS23435 () | 1100852..1100971 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| ECDH1_RS25020 () | 1101036..1105616 | + | 4581 | WP_010723187.1 | putative autotransporter | VF |
| ECDH1_RS05460 () | 1105980..1106309 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| ECDH1_RS05465 () | 1106330..1106647 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| ECDH1_RS23485 () | 1106685..1106885 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| ECDH1_RS05470 () | 1106894..1107376 | - | 483 | WP_001407480.1 | RadC family protein | - |
| ECDH1_RS05475 () | 1107385..1107843 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| ECDH1_RS23490 () | 1107946..1108169 | - | 224 | Protein_1032 | DUF905 family protein | - |
| ECDH1_RS05480 () | 1108741..1110444 | - | 1704 | WP_000896263.1 | hypothetical protein | - |
| ECDH1_RS05485 () | 1110586..1111595 | + | 1010 | Protein_1034 | arsenic transporter | - |
| ECDH1_RS05490 () | 1111608..1111922 | + | 315 | WP_000065803.1 | arsenate reductase | - |
| ECDH1_RS05495 () | 1112147..1112614 | - | 468 | WP_000702495.1 | hypothetical protein | - |
| ECDH1_RS05500 () | 1112638..1113081 | - | 444 | WP_000824222.1 | hypothetical protein | - |
| ECDH1_RS05505 () | 1113081..1113317 | - | 237 | WP_001144029.1 | hypothetical protein | - |
| ECDH1_RS05510 () | 1113358..1114059 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| ECDH1_RS05515 () | 1114276..1115097 | - | 822 | WP_000197391.1 | DUF945 domain-containing protein | - |
| ECDH1_RS05520 () | 1115189..1116052 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| ECDH1_RS05525 () | 1116407..1116778 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| ECDH1_RS05530 () | 1116771..1117844 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| ECDH1_RS05535 () | 1117986..1118249 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| ECDH1_RS05540 () | 1118609..1120225 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| ECDH1_RS05545 () | 1120222..1122411 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| ECDH1_RS05550 () | 1122589..1123215 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| ECDH1_RS05555 () | 1123368..1124777 | - | 1410 | WP_000481742.1 | DUF3987 domain-containing protein | - |
| ECDH1_RS05560 () | 1124906..1125118 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| ECDH1_RS05565 () | 1125162..1126118 | + | 957 | WP_000510827.1 | hypothetical protein | - |
| ECDH1_RS05570 () | 1126362..1127603 | - | 1242 | WP_000101723.1 | Prophage integrase IntA ; Integrase | Integrase |
| ECDH1_RS05575 () | 1128384..1128866 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| ECDH1_RS05580 () | 1129037..1129474 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| ECDH1_RS05585 () | 1129464..1129754 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| ECDH1_RS05590 () | 1129816..1130157 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| ECDH1_RS05595 () | 1130306..1131967 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| ECDH1_RS05600 () | 1132053..1132931 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0 |