MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 39265 bp
Accession: NC_013718 Location: 1..39265 Organism: Citrobacter rodentium ICC168 Replicon: plasmid pCROD2
Accession: NC_013718 Location: 1..39265 Organism: Citrobacter rodentium ICC168 Replicon: plasmid pCROD2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ROD_RS25270 () | 53..400 | - | 348 | WP_000681613.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| ROD_RS25275 () | 397..645 | - | 249 | WP_000520549.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| ROD_RS25280 () | 951..1301 | - | 351 | WP_000854261.1 | hypothetical protein | - |
| ROD_RS25285 () | 1393..1692 | - | 300 | WP_000650311.1 | hypothetical protein | - |
| ROD_RS27235 () | 2146..2373 | - | 228 | WP_000801440.1 | hypothetical protein | Antitoxin Detail |
| ROD_RS25290 () | 2360..2611 | - | 252 | WP_001230707.1 | hypothetical protein | Toxin Detail |
| ROD_RS25295 () | 2608..3150 | - | 543 | WP_012908950.1 | hypothetical protein | - |
| ROD_RS25300 () | 3255..3770 | - | 516 | WP_001025397.1 | J domain-containing protein | - |
| ROD_RS25305 () | 4410..4760 | - | 351 | WP_000312755.1 | hypothetical protein | - |
| ROD_RS25310 () | 4784..5065 | - | 282 | WP_000220561.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ROD_RS25315 () | 5055..5306 | - | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| ROD_RS25320 () | 6671..7678 | + | 1008 | WP_000243325.1 | replication initiation protein | - |
| ROD_RS25325 () | 7744..8148 | + | 405 | WP_000654312.1 | hypothetical protein | - |
| ROD_RS25330 () | 8284..8811 | + | 528 | WP_000577047.1 | DUF2726 domain-containing protein | - |
| ROD_RS25340 () | 9383..9634 | - | 252 | WP_000905714.1 | hypothetical protein | - |
| ROD_RS25345 () | 9671..9973 | - | 303 | WP_001062963.1 | hypothetical protein | - |
| ROD_RS25350 () | 10139..10798 | - | 660 | WP_000516230.1 | hypothetical protein | VF |
| ROD_RS25355 () | 10903..11727 | - | 825 | WP_012908952.1 | Tyrosine recombinase XerD | VF |
| ROD_RS25360 () | 12073..12552 | + | 480 | WP_000190053.1 | hypothetical protein | - |
| ROD_RS25365 () | 12991..13782 | + | 792 | WP_000163250.1 | hypothetical protein | - |
| ROD_RS27260 () | 13794..14003 | - | 210 | Protein_20 | hypothetical protein | - |
| ROD_RS25370 () | 14086..14742 | - | 657 | WP_001333378.1 | hypothetical protein | - |
| ROD_RS25375 () | 14846..15310 | - | 465 | WP_001293133.1 | H-NS histone family protein | - |
| ROD_RS25380 () | 15326..15532 | - | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| ROD_RS25385 () | 15529..17682 | - | 2154 | WP_012908954.1 | type IA DNA topoisomerase | - |
| ROD_RS27265 () | 17687..18262 | - | 576 | WP_012908955.1 | hypothetical protein | - |
| ROD_RS27270 () | 18273..18548 | - | 276 | WP_000109868.1 | hypothetical protein | - |
| ROD_RS25390 () | 18623..19375 | - | 753 | WP_000988355.1 | hypothetical protein | - |
| ROD_RS25395 () | 19654..20166 | - | 513 | WP_001221547.1 | thermonuclease family protein | - |
| ROD_RS28825 () | 20163..20597 | - | 435 | WP_012908957.1 | hypothetical protein | - |
| ROD_RS27280 () | 20669..20920 | - | 252 | WP_001103395.1 | hypothetical protein | - |
| ROD_RS25405 () | 21016..21243 | - | 228 | WP_000803716.1 | hypothetical protein | - |
| ROD_RS25410 () | 21272..22687 | - | 1416 | WP_000869132.1 | YadA-like family protein | - |
| ROD_RS25415 () | 22788..23093 | - | 306 | WP_001350475.1 | putative conjugal transfer protein | - |
| ROD_RS25420 () | 23077..23496 | - | 420 | WP_000737410.1 | hypothetical protein | - |
| ROD_RS25425 () | 23508..25370 | - | 1863 | WP_000847103.1 | type IV secretory system conjugative DNA transfer family protein | - |
| ROD_RS25430 () | 25357..26385 | - | 1029 | WP_000017224.1 | Type IV secretion system protein VirB11 | VF |
| ROD_RS25435 () | 26387..27505 | - | 1119 | WP_000131267.1 | Type IV secretion system protein virB10 | VF |
| ROD_RS25440 () | 27498..28406 | - | 909 | WP_001299943.1 | Type IV secretion system protein virB9 | VF |
| ROD_RS25445 () | 28403..29089 | - | 687 | WP_001290765.1 | Type IV secretion system protein virB8 | VF |
| ROD_RS25460 () | 29604..30683 | - | 1080 | WP_000007791.1 | hypothetical protein | VF |
| ROD_RS25465 () | 30694..31056 | - | 363 | Protein_41 | type IV secretion system protein VirB5 | - |
| ROD_RS25470 () | 31089..32057 | + | 969 | WP_012904651.1 | IS5 family transposase IS903B | Transposase |
| ROD_RS25475 () | 32114..32461 | - | 348 | Protein_43 | type IV secretion system protein VirB5 | - |
| ROD_RS25480 () | 32473..35220 | - | 2748 | WP_000105979.1 | Type IV secretion system protein virB4 | VF |
| ROD_RS25485 () | 35239..35511 | - | 273 | WP_001328551.1 | Type IV secretion system protein virB2 | VF |
| ROD_RS27290 () | 35579..36199 | - | 621 | WP_012908959.1 | Type IV secretion system protein virB1 | VF |
| ROD_RS25495 () | 36637..36870 | - | 234 | WP_000121162.1 | EexN family lipoprotein | - |
| ROD_RS25500 () | 36875..37141 | - | 267 | WP_000160396.1 | hypothetical protein | - |
| ROD_RS25505 () | 37218..38447 | - | 1230 | WP_000539545.1 | hypothetical protein | Relaxase |
| ROD_RS25510 () | 38451..38954 | - | 504 | WP_000781818.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|