MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 93209 bp
Accession: NC_012926 Location: 1032547..1125755 Organism: Streptococcus suis BM407 Replicon: chromosome
Accession: NC_012926 Location: 1032547..1125755 Organism: Streptococcus suis BM407 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSUBM407_RS05030 () | 1030881..1030964 | + | 84 | WP_001814874.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| SSUBM407_RS05035 () | 1031089..1031826 | + | 738 | WP_002321849.1 | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | - |
| SSUBM407_RS05040 () | 1031996..1032256 | + | 261 | Protein_951 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| SSUBM407_RS05045 () | 1032298..1032672 | + | 375 | WP_001140406.1 | TnpV protein | - |
| SSUBM407_RS05050 () | 1033039..1034958 | + | 1920 | WP_012775603.1 | Tetracycline resistance protein TetO | VF |
| SSUBM407_RS05055 () | 1035010..1035198 | + | 189 | WP_079394308.1 | cysteine-rich KTR domain-containing protein | - |
| SSUBM407_RS05065 () | 1035371..1036234 | - | 864 | WP_002294505.1 | Aminoglycoside 6-adenylyltransferase | ARG |
| SSUBM407_RS05070 () | 1036267..1036950 | - | 684 | WP_012775604.1 | class I SAM-dependent methyltransferase | - |
| SSUBM407_RS05075 () | 1037077..1037550 | - | 474 | WP_012775605.1 | dihydrofolate reductase | - |
| SSUBM407_RS05080 () | 1037653..1038678 | - | 1026 | WP_012775606.1 | IS1595 family transposase ISSsu9 | Transposase |
| SSUBM407_RS05085 () | 1038786..1039655 | - | 870 | WP_012775607.1 | nucleotidyltransferase domain-containing protein | Toxin Detail |
| SSUBM407_RS05090 () | 1039670..1039894 | - | 225 | WP_000205227.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| SSUBM407_RS05095 () | 1040037..1040117 | - | 81 | Protein_961 | site-specific recombinase | - |
| SSUBM407_RS05100 () | 1041609..1042247 | + | 639 | WP_011922443.1 | hypothetical protein | - |
| SSUBM407_RS05105 () | 1042286..1043362 | + | 1077 | WP_011922442.1 | toprim domain-containing protein | - |
| SSUBM407_RS05110 () | 1043416..1043643 | + | 228 | WP_011922441.1 | hypothetical protein | - |
| SSUBM407_RS05115 () | 1043640..1044029 | + | 390 | WP_011922440.1 | methyl-accepting chemotaxis protein | - |
| SSUBM407_RS05120 () | 1044079..1044369 | + | 291 | WP_024379089.1 | hypothetical protein | - |
| SSUBM407_RS05125 () | 1044439..1044915 | + | 477 | WP_012775115.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| SSUBM407_RS05130 () | 1044915..1045691 | + | 777 | WP_011922437.1 | zeta toxin family protein | Toxin Detail |
| SSUBM407_RS05135 () | 1045688..1047775 | + | 2088 | WP_011922436.1 | AAA family ATPase | - |
| SSUBM407_RS05140 () | 1047762..1049579 | + | 1818 | WP_012775114.1 | ATP-dependent helicase | - |
| SSUBM407_RS05145 () | 1049674..1049991 | - | 318 | Protein_971 | ATP-binding protein | - |
| SSUBM407_RS05150 () | 1050335..1050649 | + | 315 | WP_012775608.1 | YdcP family protein | - |
| SSUBM407_RS05155 () | 1050665..1051051 | + | 387 | WP_000985015.1 | YdcP family protein | - |
| SSUBM407_RS05160 () | 1051080..1052462 | + | 1383 | WP_012775609.1 | DNA translocase FtsK | - |
| SSUBM407_RS05165 () | 1052465..1052618 | + | 154 | Protein_975 | conjugal transfer protein | - |
| SSUBM407_RS05170 () | 1052641..1053846 | + | 1206 | WP_000398284.1 | replication initiation factor domain-containing protein | - |
| SSUBM407_RS05175 () | 1053889..1054110 | + | 222 | WP_001009056.1 | hypothetical protein | - |
| SSUBM407_RS05180 () | 1054227..1054724 | + | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| SSUBM407_RS05185 () | 1054699..1055205 | + | 507 | WP_000506270.1 | conjugal transfer protein | - |
| SSUBM407_RS05190 () | 1055189..1057636 | + | 2448 | WP_000331160.1 | ATP-binding protein | - |
| SSUBM407_RS05195 () | 1057639..1059453 | + | 1815 | Protein_981 | YtxH domain-containing protein | - |
| SSUBM407_RS05200 () | 1059554..1060600 | + | 1047 | WP_012775610.1 | IS1595 family transposase ISCba1 | Transposase |
| SSUBM407_RS05205 () | 1060737..1061360 | + | 624 | WP_012775611.1 | type A chloramphenicol O-acetyltransferase | - |
| SSUBM407_RS05210 () | 1061519..1061887 | + | 369 | Protein_984 | hypothetical protein | - |
| SSUBM407_RS05215 () | 1061884..1062885 | + | 1002 | WP_000769868.1 | putative endopeptidase p60 | VF |
| SSUBM407_RS05220 () | 1062882..1063814 | + | 933 | WP_012775612.1 | conjugal transfer protein | - |
| SSUBM407_RS05225 () | 1064059..1064175 | + | 117 | WP_001814923.1 | tetracycline resistance determinant leader peptide | - |
| SSUBM407_RS05230 () | 1064191..1066110 | + | 1920 | WP_012775613.1 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| SSUBM407_RS05235 () | 1066220..1066270 | + | 51 | Protein_989 | tetracycline resistance efflux system leader peptide | - |
| SSUBM407_RS05240 () | 1066304..1067680 | + | 1377 | WP_002294500.1 | Riboflavin transporter RibZ | ARG |
| SSUBM407_RS05245 () | 1068244..1069506 | + | 1263 | WP_000119405.1 | plasmid recombination protein | - |
| SSUBM407_RS05250 () | 1069781..1070080 | - | 300 | WP_044980193.1 | helix-turn-helix domain-containing protein | - |
| SSUBM407_RS05255 () | 1070585..1071007 | + | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| SSUBM407_RS05260 () | 1071004..1071234 | + | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| SSUBM407_RS05265 () | 1071695..1071898 | + | 204 | WP_000814511.1 | excisionase | - |
| SSUBM407_RS05270 () | 1071980..1073197 | + | 1218 | WP_001291561.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| SSUBM407_RS05275 () | 1073319..1074215 | - | 897 | WP_011922433.1 | ATP-binding protein | - |
| SSUBM407_RS05280 () | 1074580..1074945 | + | 366 | WP_012775113.1 | hypothetical protein | - |
| SSUBM407_RS05285 () | 1074945..1075310 | + | 366 | WP_011922431.1 | MobC family plasmid mobilization relaxosome protein | - |
| SSUBM407_RS05290 () | 1075297..1077162 | + | 1866 | WP_012775614.1 | relaxase/mobilization nuclease domain-containing protein | - |
| SSUBM407_RS05295 () | 1077484..1077606 | + | 123 | WP_017370910.1 | hypothetical protein | - |
| SSUBM407_RS05300 () | 1077623..1079824 | + | 2202 | WP_044770510.1 | Multidrug resistance ABC transporter ATP-binding and permease protein | VF |
| SSUBM407_RS05305 () | 1079837..1080553 | + | 717 | WP_011922427.1 | putative ABC transporter ATP-binding protein YxlF | VF |
| SSUBM407_RS05310 () | 1080543..1081334 | + | 792 | WP_043029019.1 | ABC transporter permease | - |
| SSUBM407_RS05315 () | 1081331..1082038 | + | 708 | WP_012775617.1 | ABC transporter permease | - |
| SSUBM407_RS05320 () | 1082069..1082752 | + | 684 | WP_012775618.1 | Response regulator ArlR | VF |
| SSUBM407_RS05325 () | 1082737..1083834 | + | 1098 | WP_012775619.1 | HAMP domain-containing histidine kinase | - |
| SSUBM407_RS05330 () | 1084164..1084385 | + | 222 | WP_011922422.1 | helix-turn-helix transcriptional regulator | - |
| SSUBM407_RS05335 () | 1084664..1084891 | + | 228 | WP_012775620.1 | DUF3173 family protein | - |
| SSUBM407_RS05340 () | 1084914..1086113 | + | 1200 | WP_012775621.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| SSUBM407_RS05345 () | 1086298..1087047 | + | 750 | WP_011922420.1 | HAD family hydrolase | - |
| SSUBM407_RS05350 () | 1087243..1088577 | + | 1335 | WP_011922419.1 | methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO | - |
| SSUBM407_RS05355 () | 1088654..1089490 | + | 837 | WP_014636394.1 | AraC family transcriptional regulator | - |
| SSUBM407_RS05360 () | 1089555..1090559 | + | 1005 | WP_012775107.1 | winged helix DNA-binding domain-containing protein | - |
| SSUBM407_RS05365 () | 1090673..1091500 | + | 828 | WP_011922416.1 | alpha/beta hydrolase | - |
| SSUBM407_RS05370 () | 1091531..1092277 | + | 747 | WP_011922415.1 | esterase family protein | - |
| SSUBM407_RS05375 () | 1092295..1093461 | + | 1167 | WP_012775622.1 | carbamoyl phosphate synthase large subunit | - |
| SSUBM407_RS10640 () | 1093601..1093741 | + | 141 | WP_012775106.1 | hypothetical protein | - |
| SSUBM407_RS05380 () | 1093754..1094131 | + | 378 | WP_011922413.1 | NisI/SpaI family lantibiotic immunity lipoprotein | - |
| SSUBM407_RS05385 () | 1094152..1095054 | + | 903 | WP_011922412.1 | putative ABC transporter ATP-binding protein YxlF | VF |
| SSUBM407_RS05390 () | 1095056..1095802 | + | 747 | WP_011922411.1 | ABC transporter permease | - |
| SSUBM407_RS05395 () | 1095804..1096538 | + | 735 | WP_011922410.1 | ABC transporter permease | - |
| SSUBM407_RS05400 () | 1096674..1097426 | + | 753 | WP_011922409.1 | ABC transporter ATP-binding protein YxdL | VF |
| SSUBM407_RS05405 () | 1097427..1099397 | + | 1971 | WP_012775105.1 | FtsX-like permease family protein | - |
| SSUBM407_RS05410 () | 1099489..1099740 | + | 252 | WP_012775104.1 | hypothetical protein | Antitoxin Detail |
| SSUBM407_RS05415 () | 1099724..1099981 | + | 258 | WP_011922404.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SSUBM407_RS05420 () | 1100020..1100685 | + | 666 | WP_012775103.1 | Response regulator protein GraR | VF |
| SSUBM407_RS05425 () | 1100682..1101623 | + | 942 | WP_012775102.1 | sensor histidine kinase | - |
| SSUBM407_RS05430 () | 1101699..1103207 | + | 1509 | WP_011922400.1 | Phosphomannomutase/phosphoglucomutase | VF |
| SSUBM407_RS05435 () | 1103277..1104347 | - | 1071 | WP_012775101.1 | Tyrosine recombinase XerS ; Integrase | Integrase |
| SSUBM407_RS05440 () | 1104706..1105668 | - | 963 | Protein_1031 | Abi family protein | - |
| SSUBM407_RS05450 () | 1106319..1106756 | - | 438 | WP_011922397.1 | AAA family ATPase | - |
| SSUBM407_RS05455 () | 1106821..1107561 | - | 741 | WP_011922396.1 | DUF3307 domain-containing protein | - |
| SSUBM407_RS05460 () | 1107565..1108233 | - | 669 | WP_011922395.1 | SatD family protein | - |
| SSUBM407_RS05465 () | 1108427..1109965 | - | 1539 | WP_012775623.1 | signal recognition particle protein | - |
| SSUBM407_RS05470 () | 1109978..1110310 | - | 333 | WP_002935001.1 | putative DNA-binding protein | - |
| SSUBM407_RS05475 () | 1110413..1111111 | - | 699 | WP_002943214.1 | GntR family transcriptional regulator | - |
| SSUBM407_RS05480 () | 1111387..1112937 | + | 1551 | WP_002934999.1 | glutamine-hydrolyzing GMP synthase | - |
| SSUBM407_RS05485 () | 1113112..1114161 | - | 1050 | WP_011922381.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| SSUBM407_RS05490 () | 1114158..1115855 | - | 1698 | WP_012775094.1 | AAA family ATPase | - |
| SSUBM407_RS05495 () | 1116051..1116815 | + | 765 | WP_012775624.1 | lipoprotein | - |
| SSUBM407_RS05500 () | 1116843..1117790 | + | 948 | WP_011922378.1 | hypothetical protein | - |
| SSUBM407_RS05505 () | 1117811..1118164 | - | 354 | WP_002943204.1 | HIRAN domain-containing protein | - |
| SSUBM407_RS05510 () | 1118186..1118935 | - | 750 | WP_012775625.1 | lipoprotein | - |
| SSUBM407_RS05515 () | 1118952..1119710 | - | 759 | WP_002943202.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| SSUBM407_RS05520 () | 1119811..1120410 | - | 600 | WP_011922375.1 | lysozyme family protein | - |
| SSUBM407_RS05525 () | 1120411..1121385 | - | 975 | WP_002943200.1 | nucleoid-associated protein | - |
| SSUBM407_RS05530 () | 1121385..1122644 | - | 1260 | WP_011922374.1 | serine hydroxymethyltransferase | - |
| SSUBM407_RS05535 () | 1122668..1123099 | - | 432 | WP_011922373.1 | GNAT family N-acetyltransferase | - |
| SSUBM407_RS05540 () | 1123096..1123704 | - | 609 | WP_011922372.1 | threonylcarbamoyl-AMP synthase | - |
| SSUBM407_RS05545 () | 1123691..1124524 | - | 834 | WP_011922371.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| SSUBM407_RS05550 () | 1124524..1125603 | - | 1080 | WP_012775090.1 | peptide chain release factor 1 | - |
| SSUBM407_RS05555 () | 1126054..1126635 | - | 582 | WP_012028098.1 | thymidine kinase | - |
| SSUBM407_RS05560 () | 1127020..1128327 | - | 1308 | WP_012028097.1 | excalibur calcium-binding domain-containing protein | - |
| SSUBM407_RS05565 () | 1128462..1128644 | + | 183 | WP_002934978.1 | 4-oxalocrotonate tautomerase | - |
| SSUBM407_RS05570 () | 1128694..1130526 | - | 1833 | WP_002943192.1 | translation elongation factor 4 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|