MGE detailed information
MGE type: Conjugative plasmid MGE length: 121408 bp
Accession: NC_007961 Location: 1..121408 Organism: Nitrobacter hamburgensis X14 Replicon: plasmid 3
Accession: NC_007961 Location: 1..121408 Organism: Nitrobacter hamburgensis X14 Replicon: plasmid 3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NHAM_RS23140 () | 122..3445 | + | 3324 | WP_011505201.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| NHAM_RS23145 () | 3442..3975 | + | 534 | WP_011505202.1 | conjugative transfer signal peptidase TraF | - |
| NHAM_RS23150 () | 3995..5131 | + | 1137 | WP_011505203.1 | conjugal transfer protein TraB | - |
| NHAM_RS23155 () | 5143..5766 | + | 624 | WP_011505204.1 | conjugal transfer protein TraH | - |
| NHAM_RS23160 () | 5851..6162 | - | 312 | Protein_4 | type II toxin-antitoxin system VapC family toxin | - |
| NHAM_RS23165 () | 6219..6538 | - | 320 | Protein_5 | transposase | - |
| NHAM_RS23170 () | 7284..8003 | + | 720 | WP_011505205.1 | hypothetical protein | - |
| NHAM_RS24330 () | 8473..8919 | + | 447 | WP_011505206.1 | hypothetical protein | - |
| NHAM_RS24335 () | 8944..9324 | - | 381 | WP_011505207.1 | hypothetical protein | - |
| NHAM_RS23190 () | 9433..9933 | - | 501 | WP_011504831.1 | hypothetical protein | VF |
| NHAM_RS23195 () | 10019..10480 | - | 462 | WP_011504830.1 | Hsp20 family protein | - |
| NHAM_RS27825 () | 10902..11330 | - | 429 | WP_011504829.1 | type II toxin-antitoxin system VapC family toxin | - |
| NHAM_RS27830 () | 11327..11581 | - | 255 | WP_011504828.1 | hypothetical protein | - |
| NHAM_RS23215 () | 11777..11944 | + | 168 | WP_157043862.1 | hypothetical protein | - |
| NHAM_RS23220 () | 11949..12227 | + | 279 | Protein_14 | transcriptional regulator | - |
| NHAM_RS23225 () | 13055..14200 | - | 1146 | WP_011505211.1 | IS110 family transposase ISAzs32 | Transposase |
| NHAM_RS25980 () | 14425..14742 | + | 318 | WP_198137077.1 | transcriptional repressor TraM | - |
| NHAM_RS23230 () | 14844..15548 | - | 705 | WP_011505213.1 | autoinducer binding domain-containing protein | - |
| NHAM_RS23235 () | 15988..17289 | - | 1302 | WP_011505214.1 | hypothetical protein | VF |
| NHAM_RS23240 () | 17300..17752 | - | 453 | WP_011505215.1 | conjugal transfer protein TrbH | - |
| NHAM_RS23245 () | 17755..18594 | - | 840 | WP_011505216.1 | P-type conjugative transfer protein TrbG | - |
| NHAM_RS23250 () | 18612..19274 | - | 663 | WP_011505217.1 | conjugal transfer protein TrbF | - |
| NHAM_RS23255 () | 19317..20471 | - | 1155 | WP_011505218.1 | P-type conjugative transfer protein TrbL | - |
| NHAM_RS27835 () | 20484..20669 | - | 186 | WP_011505219.1 | entry exclusion protein TrbK | - |
| NHAM_RS23265 () | 20666..21463 | - | 798 | WP_011505220.1 | P-type conjugative transfer protein TrbJ | - |
| NHAM_RS23270 () | 21435..23888 | - | 2454 | WP_011505221.1 | conjugal transfer protein TrbE | - |
| NHAM_RS23275 () | 23898..24197 | - | 300 | WP_011505222.1 | conjugal transfer protein TrbD | - |
| NHAM_RS23280 () | 24190..24561 | - | 372 | WP_011505223.1 | TrbC/VirB2 family protein | - |
| NHAM_RS23285 () | 24551..25519 | - | 969 | WP_041359818.1 | Type IV secretion system protein VirB11 | VF |
| NHAM_RS23290 () | 25537..26160 | - | 624 | WP_011505225.1 | hypothetical protein | VF |
| NHAM_RS23295 () | 26576..27790 | + | 1215 | WP_011505226.1 | hypothetical protein | VF |
| NHAM_RS23300 () | 27787..28818 | + | 1032 | WP_011505227.1 | plasmid partitioning protein RepB | - |
| NHAM_RS23305 () | 29095..30420 | + | 1326 | WP_011505228.1 | replication initiation protein RepC | - |
| NHAM_RS23310 () | 30502..30750 | + | 249 | WP_041359822.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| NHAM_RS23315 () | 30747..31160 | + | 414 | WP_011505230.1 | type II toxin-antitoxin system VapC family toxin | - |
| NHAM_RS23320 () | 31165..32238 | - | 1074 | WP_011505231.1 | tyrosine-type recombinase/integrase | - |
| NHAM_RS23325 () | 32241..32627 | - | 387 | WP_011505232.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| NHAM_RS23330 () | 32627..32881 | - | 255 | WP_011505233.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| NHAM_RS23335 () | 33183..34838 | + | 1656 | WP_011505234.1 | DDE-type integrase/transposase/recombinase | - |
| NHAM_RS23340 () | 34829..35758 | + | 930 | WP_041359759.1 | TniB family NTP-binding protein | - |
| NHAM_RS25985 () | 35755..36975 | + | 1221 | WP_198137078.1 | TniQ family protein | - |
| NHAM_RS23350 () | 37169..38113 | + | 945 | WP_011505237.1 | DUF1403 family protein | - |
| NHAM_RS23355 () | 38131..38829 | + | 699 | WP_011505238.1 | SMC-Scp complex subunit ScpB | - |
| NHAM_RS23360 () | 39117..39290 | - | 174 | WP_157043864.1 | hypothetical protein | - |
| NHAM_RS25990 () | 39425..39991 | + | 567 | WP_081435108.1 | DUF1612 domain-containing protein | - |
| NHAM_RS23370 () | 40050..40340 | + | 291 | WP_011505239.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| NHAM_RS23375 () | 40337..40843 | + | 507 | WP_041359829.1 | GNAT family N-acetyltransferase | Toxin Detail |
| NHAM_RS23380 () | 41155..42996 | + | 1842 | WP_011505241.1 | diguanylate cyclase | - |
| NHAM_RS23390 () | 43982..45325 | + | 1344 | WP_011510130.1 | IS1380 family transposase ISNha3 | Transposase |
| NHAM_RS27370 () | 45569..45823 | + | 255 | WP_157043865.1 | hypothetical protein | - |
| NHAM_RS23395 () | 45836..46096 | - | 261 | WP_157043866.1 | hypothetical protein | - |
| NHAM_RS25995 () | 46371..46616 | + | 246 | Protein_51 | IS21 family transposase | - |
| NHAM_RS23405 () | 46677..48005 | - | 1329 | WP_011505244.1 | hemolysin family protein | - |
| NHAM_RS26000 () | 48423..48848 | + | 426 | Protein_53 | IS5 family transposase ISMca7 | Transposase |
| NHAM_RS23410 () | 48782..49862 | + | 1081 | Protein_54 | helix-turn-helix domain-containing protein | - |
| NHAM_RS23415 () | 50051..50476 | + | 426 | WP_011505245.1 | IS200-IS605 family transposase ISPlu2 | Transposase |
| NHAM_RS23420 () | 50684..51910 | + | 1227 | WP_011505246.1 | Na+/H+ antiporter NhaA | - |
| NHAM_RS23425 () | 51953..53017 | + | 1065 | WP_011505247.1 | IS630 family transposase ISRj1 | Transposase |
| NHAM_RS23430 () | 53096..54199 | + | 1104 | WP_011505248.1 | IS630 family transposase ISBj5 | Transposase |
| NHAM_RS23435 () | 54790..55854 | + | 1065 | WP_011505249.1 | fatty acid desaturase | - |
| NHAM_RS23440 () | 55950..56873 | + | 924 | WP_041359770.1 | PHB depolymerase family esterase | - |
| NHAM_RS27380 () | 57100..57243 | + | 144 | WP_157043868.1 | hypothetical protein | - |
| NHAM_RS26005 () | 57395..57983 | - | 589 | Protein_62 | chemotaxis protein CheB | - |
| NHAM_RS23460 () | 57980..61192 | - | 3213 | WP_157043873.1 | Protein-glutamate methylesterase/protein-glutamine glutaminase | VF |
| NHAM_RS26010 () | 61332..61844 | - | 513 | WP_157043869.1 | hypothetical protein | - |
| NHAM_RS23475 () | 62000..63430 | + | 1431 | WP_011505253.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| NHAM_RS26015 () | 63627..63791 | + | 165 | Protein_66 | transposase | - |
| NHAM_RS26020 () | 64038..65504 | + | 1467 | Protein_67 | hypothetical protein | - |
| NHAM_RS23485 () | 65499..66667 | - | 1169 | Protein_68 | Na+/H+ antiporter NhaA | - |
| NHAM_RS23490 () | 66743..68224 | - | 1482 | WP_011505254.1 | SulP family inorganic anion transporter | - |
| NHAM_RS27385 () | 68688..68807 | - | 120 | Protein_70 | IS4 family transposase ISDar2 | Transposase |
| NHAM_RS27390 () | 68969..69163 | - | 195 | WP_157043870.1 | hypothetical protein | - |
| NHAM_RS23495 () | 69424..70143 | + | 720 | WP_011505255.1 | hypothetical protein | - |
| NHAM_RS23500 () | 70140..70376 | + | 237 | WP_011505256.1 | hypothetical protein | - |
| NHAM_RS23505 () | 70485..70940 | + | 456 | WP_011505257.1 | hypothetical protein | - |
| NHAM_RS24365 () | 72649..74013 | - | 1365 | WP_011505260.1 | PAS domain-containing protein | - |
| NHAM_RS23525 () | 74173..74718 | + | 546 | Protein_76 | IS630 family transposase ISAr1 | Transposase |
| NHAM_RS23530 () | 74752..75144 | - | 393 | WP_011505261.1 | sulfurtransferase | - |
| NHAM_RS23535 () | 75255..76163 | - | 909 | WP_011505262.1 | MBL fold metallo-hydrolase | - |
| NHAM_RS23540 () | 76176..76979 | - | 804 | WP_011505263.1 | sulfite exporter TauE/SafE family protein | - |
| NHAM_RS23545 () | 76976..77431 | - | 456 | WP_011505264.1 | membrane protein | - |
| NHAM_RS23550 () | 77435..77860 | - | 426 | WP_011505265.1 | YeeE/YedE family protein | - |
| NHAM_RS26025 () | 79116..79433 | + | 318 | WP_011505266.1 | hypothetical protein | - |
| NHAM_RS23560 () | 79583..80317 | - | 735 | Protein_83 | IS110 family transposase ISMdi9 | Transposase |
| NHAM_RS27395 () | 80455..80715 | - | 261 | WP_157043871.1 | hypothetical protein | - |
| NHAM_RS23565 () | 80954..81574 | + | 621 | WP_011505268.1 | class I SAM-dependent methyltransferase | - |
| NHAM_RS23570 () | 81637..84042 | - | 2406 | WP_011505269.1 | Silver exporting P-type ATPase | VF |
| NHAM_RS23575 () | 84074..84517 | + | 444 | WP_041359791.1 | hypothetical protein | - |
| NHAM_RS23580 () | 84597..84896 | + | 300 | WP_041359793.1 | hypothetical protein | - |
| NHAM_RS23585 () | 84906..86363 | + | 1458 | WP_011505272.1 | TolC family protein | - |
| NHAM_RS23590 () | 86375..87763 | + | 1389 | WP_011505273.1 | copper oxidase | - |
| NHAM_RS23595 () | 87811..88110 | + | 300 | WP_011505274.1 | copper-binding protein | - |
| NHAM_RS23600 () | 88159..88548 | + | 390 | Protein_92 | DUF4396 domain-containing protein | - |
| NHAM_RS23605 () | 88828..89445 | + | 618 | WP_011505276.1 | cytochrome c | - |
| NHAM_RS26035 () | 89872..90284 | + | 413 | Protein_94 | IS630 family transposase ISRj1 | Transposase |
| NHAM_RS23610 () | 90404..90907 | - | 504 | WP_011505277.1 | type II toxin-antitoxin system YhaV family toxin | - |
| NHAM_RS23615 () | 90904..91245 | - | 342 | WP_011505278.1 | type II toxin-antitoxin system PrlF family antitoxin | - |
| NHAM_RS23620 () | 91708..92598 | - | 891 | WP_011505279.1 | methyltransferase domain-containing protein | - |
| NHAM_RS26040 () | 92585..92755 | - | 171 | Protein_98 | S-methyl-5'-thioadenosine phosphorylase | - |
| NHAM_RS23625 () | 92795..93397 | - | 603 | WP_041359797.1 | TlpA family protein disulfide reductase | - |
| NHAM_RS23630 () | 93394..94065 | - | 672 | WP_011505281.1 | DUF1109 domain-containing protein | - |
| NHAM_RS23635 () | 94062..94697 | - | 636 | WP_011505282.1 | sigma-70 family RNA polymerase sigma factor | - |
| NHAM_RS23640 () | 95274..95618 | + | 345 | WP_011505283.1 | DUF2282 domain-containing protein | - |
| NHAM_RS23645 () | 95686..96582 | + | 897 | WP_011505284.1 | DUF692 domain-containing protein | - |
| NHAM_RS23650 () | 96566..97372 | + | 807 | WP_011505285.1 | DNA-binding domain-containing protein | - |
| NHAM_RS23655 () | 97369..97893 | + | 525 | WP_011505286.1 | DoxX family protein | - |
| NHAM_RS27840 () | 98015..98251 | + | 237 | WP_198137080.1 | IS21 family transposase ISSsp5 | Transposase |
| NHAM_RS23665 () | 98615..99680 | + | 1066 | Protein_107 | IS630 family transposase ISRj1 | Transposase |
| NHAM_RS23670 () | 100368..100550 | + | 183 | WP_011505287.1 | hypothetical protein | - |
| NHAM_RS23675 () | 100782..101750 | + | 969 | WP_011505288.1 | DUF3991 domain-containing protein | - |
| NHAM_RS23680 () | 101892..102491 | + | 600 | WP_011505289.1 | DUF1419 domain-containing protein | - |
| NHAM_RS23685 () | 102503..103061 | + | 559 | Protein_111 | hypothetical protein | - |
| NHAM_RS23690 () | 103222..108324 | + | 5103 | WP_011505290.1 | lactate dehydrogenase | - |
| NHAM_RS23695 () | 108321..108749 | - | 429 | WP_011505291.1 | type II toxin-antitoxin system MqsA family antitoxin | - |
| NHAM_RS23700 () | 108752..109057 | - | 306 | WP_011505292.1 | type II toxin-antitoxin system MqsR family toxin | - |
| NHAM_RS23705 () | 109403..111076 | + | 1674 | WP_011505293.1 | ParB/RepB/Spo0J family partition protein | - |
| NHAM_RS23710 () | 111168..111644 | + | 477 | WP_011505294.1 | hypothetical protein | - |
| NHAM_RS23715 () | 111641..112510 | + | 870 | WP_011505295.1 | hypothetical protein | - |
| NHAM_RS23720 () | 112507..112794 | + | 288 | Protein_118 | hypothetical protein | - |
| NHAM_RS23725 () | 112913..113213 | + | 301 | Protein_119 | hypothetical protein | - |
| NHAM_RS23730 () | 113605..114195 | + | 591 | WP_011505298.1 | hypothetical protein | - |
| NHAM_RS23735 () | 114272..114631 | - | 360 | Protein_121 | IS91 family transposase ISAzo26 | Transposase |
| NHAM_RS23740 () | 114944..115249 | + | 306 | WP_011505299.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| NHAM_RS23745 () | 115246..115557 | + | 312 | WP_011505300.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| NHAM_RS23750 () | 115915..116386 | - | 472 | Protein_124 | IS110 family transposase ISBth13 | Transposase |
| NHAM_RS23760 () | 117229..117630 | + | 402 | WP_041359805.1 | single-stranded DNA-binding protein | - |
| NHAM_RS23765 () | 117712..117969 | - | 258 | WP_011505303.1 | WGR domain-containing protein | - |
| NHAM_RS23770 () | 118053..118406 | - | 354 | WP_198137079.1 | thermonuclease family protein | - |
| NHAM_RS23775 () | 118888..120813 | - | 1926 | WP_011505305.1 | hypothetical protein | VF |
| NHAM_RS23780 () | 120800..121015 | - | 216 | WP_011505306.1 | type IV conjugative transfer system coupling protein TraD | - |
| NHAM_RS23785 () | 121020..121280 | - | 261 | WP_011505307.1 | TraC family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|