MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 126697 bp
Accession: NC_007608 Location: 1..126697 Organism: Shigella boydii Sb227 Replicon: plasmid pSB4_227
Accession: NC_007608 Location: 1..126697 Organism: Shigella boydii Sb227 Replicon: plasmid pSB4_227
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SBO_RS24770 () | 191..563 | - | 373 | Protein_0 | IS3 family transposase IS2 | Transposase |
| SBO_RS29760 () | 2142..2261 | + | 120 | Protein_2 | DUF3440 domain-containing protein | - |
| SBO_RS24795 () | 2511..3377 | + | 867 | WP_001046942.1 | hypothetical protein | VF |
| SBO_RS24800 () | 3707..4447 | + | 741 | WP_000850661.1 | PAP2 family phosphatase PhoN2 | - |
| SBO_RS28770 () | 4800..4980 | - | 181 | Protein_5 | hypothetical protein | VF |
| SBO_RS24810 () | 4986..5683 | - | 698 | Protein_6 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS30595 () | 5740..6149 | - | 410 | Protein_7 | hypothetical protein | VF |
| SBO_RS24830 () | 7876..8394 | - | 519 | Protein_9 | IS66 family transposase IS679 | Transposase |
| SBO_RS30495 () | 8411..9096 | - | 686 | Protein_10 | IS3 family transposase ISSfl11 | Transposase |
| SBO_RS24850 () | 9786..11495 | - | 1710 | WP_004976019.1 | hypothetical protein | VF |
| SBO_RS24855 () | 11927..12646 | - | 720 | WP_001121865.1 | Phosphothreonine lyase OspF | VF |
| SBO_RS24860 () | 12771..13334 | - | 564 | Protein_13 | ISL3 family transposase ISKox3 | Transposase |
| SBO_RS28785 () | 13318..13576 | + | 259 | Protein_14 | IS1 family transposase | - |
| SBO_RS24865 () | 13685..14263 | - | 579 | WP_000868561.1 | hypothetical protein | - |
| SBO_RS24875 () | 14684..14921 | - | 238 | Protein_16 | IS21 family transposase IS21 | Transposase |
| SBO_RS24885 () | 15108..15537 | - | 430 | Protein_17 | IS91 family transposase IS91 | Transposase |
| SBO_RS24890 () | 15585..15770 | - | 186 | WP_005008511.1 | hypothetical protein | - |
| SBO_RS30500 () | 15933..16214 | + | 282 | Protein_19 | IS66 family transposase ISCro1 | Transposase |
| SBO_RS24905 () | 16228..17573 | - | 1346 | Protein_20 | IS4 family transposase IS4 | Transposase |
| SBO_RS24915 () | 17640..18017 | + | 378 | Protein_21 | IS66 family transposase ISCro1 | Transposase |
| SBO_RS24920 () | 18017..18364 | + | 348 | WP_000622995.1 | IS66 family transposase ISCro1 | Transposase |
| SBO_RS28800 () | 18384..19538 | + | 1155 | Protein_23 | IS66 family transposase | - |
| SBO_RS28805 () | 19542..19701 | + | 160 | Protein_24 | IS3 family transposase | - |
| SBO_RS28810 () | 20290..20588 | + | 299 | Protein_25 | transposase | - |
| SBO_RS29770 () | 20670..20807 | + | 138 | Protein_26 | IS630 family transposase | - |
| SBO_RS24950 () | 21177..21854 | + | 678 | WP_000026472.1 | hypothetical protein | VF |
| SBO_RS29950 () | 22178..22288 | + | 111 | Protein_28 | IS3 family transposase | - |
| SBO_RS30295 () | 22366..22680 | + | 315 | WP_032490754.1 | hypothetical protein | - |
| SBO_RS24960 () | 22962..23528 | + | 567 | WP_005057975.1 | hypothetical protein | VF |
| SBO_RS30600 () | 23790..23912 | - | 123 | Protein_31 | transposase domain-containing protein | - |
| SBO_RS24970 () | 24055..24609 | + | 555 | Protein_32 | IS3 family transposase IS3H | Transposase |
| SBO_RS24975 () | 24863..25560 | - | 698 | Protein_33 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS24985 () | 25726..26086 | + | 361 | Protein_34 | IS1 family transposase | - |
| SBO_RS24990 () | 26173..27109 | + | 937 | Protein_35 | IS21 family transposase IS100kyp | Transposase |
| SBO_RS28830 () | 27135..28344 | + | 1210 | Protein_36 | IS3 family transposase | - |
| SBO_RS25760 () | 28328..29110 | + | 783 | WP_011379060.1 | IS21 family transposase IS100kyp | Transposase |
| SBO_RS28835 () | 29177..29515 | + | 339 | Protein_38 | IS1 family transposase | - |
| SBO_RS25030 () | 29837..31036 | + | 1200 | WP_000200287.1 | AAA family ATPase | - |
| SBO_RS25035 () | 31036..32016 | + | 981 | WP_000431558.1 | ParB/RepB/Spo0J family partition protein | - |
| SBO_RS25040 () | 32272..32754 | + | 483 | Protein_41 | IS110 family transposase ISSde4 | Transposase |
| SBO_RS30305 () | 32808..32962 | - | 155 | Protein_42 | transposase domain-containing protein | - |
| SBO_RS30505 () | 33045..33803 | - | 759 | Protein_43 | IS3 family transposase IS911 | Transposase |
| SBO_RS30605 () | 33798..34420 | - | 623 | Protein_44 | transposase | - |
| SBO_RS25060 () | 35093..35377 | + | 285 | WP_011114751.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| SBO_RS25065 () | 35365..35850 | + | 486 | WP_000501969.1 | GNAT family N-acetyltransferase | Toxin Detail |
| SBO_RS30610 () | 35935..36309 | + | 375 | Protein_47 | IS3 family transposase ISLad1 | Transposase |
| SBO_RS30615 () | 36304..36855 | + | 552 | Protein_48 | IS3 family transposase ISLad1 | Transposase |
| SBO_RS25075 () | 36913..38040 | - | 1128 | WP_001063816.1 | IS110 family transposase ISSso6 | Transposase |
| SBO_RS25080 () | 38539..39327 | + | 789 | WP_005116773.1 | AraC family invasion system transcriptional regulator VirF | - |
| SBO_RS25085 () | 39320..39691 | - | 372 | Protein_51 | IS21 family transposase IS100 | Transposase |
| SBO_RS25090 () | 39690..40057 | + | 368 | Protein_52 | transposase | - |
| SBO_RS25110 () | 41495..42663 | + | 1169 | WP_094096507.1 | IS3 family transposase IS911 | Transposase |
| SBO_RS29805 () | 42859..43014 | + | 156 | Protein_55 | IS256 family transposase ISEc39 | Transposase |
| SBO_RS25120 () | 43044..44771 | - | 1728 | WP_011379066.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
| SBO_RS28870 () | 45163..45431 | - | 269 | Protein_57 | hypothetical protein | VF |
| SBO_RS30620 () | 45578..45721 | - | 144 | Protein_58 | IS1 family transposase | - |
| SBO_RS25125 () | 46115..46812 | - | 698 | Protein_59 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS30320 () | 46841..47008 | - | 168 | WP_162467016.1 | hypothetical protein | - |
| SBO_RS28885 () | 47047..47570 | + | 524 | Protein_61 | IS3 family transposase ISSfl11 | Transposase |
| SBO_RS28890 () | 47613..48822 | - | 1210 | Protein_62 | IS3 family transposase | - |
| SBO_RS25155 () | 48874..50598 | - | 1725 | WP_011379068.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| SBO_RS25160 () | 51026..52723 | - | 1698 | WP_011379069.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
| SBO_RS28895 () | 53053..53232 | + | 180 | Protein_65 | IS66 family transposase ISSfl3 | Transposase |
| SBO_RS28900 () | 53249..53939 | - | 691 | Protein_66 | IS1 family transposase | - |
| SBO_RS25185 () | 54133..55164 | - | 1032 | WP_004998488.1 | IS630 family transposase IS630 | Transposase |
| SBO_RS28905 () | 55279..56123 | - | 845 | Protein_68 | IS5 family transposase ISSfl7 | Transposase |
| SBO_RS25195 () | 56300..56590 | - | 291 | Protein_69 | IS91 family transposase | - |
| SBO_RS25200 () | 56604..57950 | - | 1347 | WP_011379070.1 | IS4 family transposase IS4 | Transposase |
| SBO_RS25205 () | 58017..58946 | - | 930 | Protein_71 | IS91 family transposase ISSbo1 | Transposase |
| SBO_RS25210 () | 58927..59199 | - | 273 | WP_000019158.1 | hypothetical protein | - |
| SBO_RS28915 () | 59366..59485 | - | 120 | Protein_73 | IS66 family transposase ISCro1 | Transposase |
| SBO_RS25215 () | 59602..61299 | - | 1698 | WP_005006403.1 | hypothetical protein | VF |
| SBO_RS28920 () | 61375..61523 | + | 149 | Protein_75 | IS1 family transposase | - |
| SBO_RS25220 () | 61627..63039 | - | 1413 | WP_001026856.1 | hypothetical protein | VF |
| SBO_RS29825 () | 63490..63552 | + | 63 | Protein_77 | IS66 family transposase ISCro1 | Transposase |
| SBO_RS29830 () | 63573..63794 | - | 222 | Protein_78 | IS66 family transposase ISCro1 | Transposase |
| SBO_RS28925 () | 63937..64287 | - | 351 | WP_171525606.1 | HNH endonuclease | - |
| SBO_RS25235 () | 64746..65921 | - | 1176 | WP_001020414.1 | putative protein YncE | VF |
| SBO_RS25240 () | 65990..68251 | - | 2262 | WP_001100761.1 | TonB-dependent receptor | - |
| SBO_RS25245 () | 68420..69196 | - | 777 | WP_000981089.1 | energy transducer TonB | - |
| SBO_RS25250 () | 69204..70079 | - | 876 | WP_001224619.1 | ChaN family lipoprotein | - |
| SBO_RS25255 () | 70356..70571 | + | 216 | Protein_84 | IS91 family transposase IS1294 | Transposase |
| SBO_RS25260 () | 70638..71984 | + | 1347 | WP_000483770.1 | IS4 family transposase IS4 | Transposase |
| SBO_RS25265 () | 71998..72288 | + | 291 | Protein_86 | IS91 family transposase | - |
| SBO_RS25270 () | 72461..72556 | - | 96 | Protein_87 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SBO_RS28935 () | 72556..72639 | - | 84 | Protein_88 | CopG family transcriptional regulator | - |
| SBO_RS25275 () | 72669..72998 | - | 330 | Protein_89 | Tn3 family transposase TnpA_ISSod9 | Transposase |
| SBO_RS25280 () | 73083..73448 | + | 366 | WP_000124126.1 | hypothetical protein | - |
| SBO_RS25285 () | 73448..74635 | + | 1188 | WP_024258531.1 | IS91 family transposase ISEc37 | Transposase |
| SBO_RS25295 () | 75172..75459 | - | 288 | WP_000865087.1 | helix-turn-helix transcriptional regulator | - |
| SBO_RS25300 () | 75459..75770 | - | 312 | WP_000483533.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SBO_RS25305 () | 76235..77431 | + | 1197 | WP_000140459.1 | IS110 family transposase ISEc20 | Transposase |
| SBO_RS25315 () | 77664..78361 | + | 698 | Protein_95 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS25320 () | 78579..78845 | - | 267 | WP_000957717.1 | hypothetical protein | VF |
| SBO_RS25325 () | 79027..79425 | - | 399 | Protein_97 | DDE-type integrase/transposase/recombinase | - |
| SBO_RS25330 () | 79748..80875 | - | 1128 | WP_001063816.1 | IS110 family transposase ISSso6 | Transposase |
| SBO_RS28960 () | 81005..81288 | - | 284 | Protein_99 | IS110 family transposase ISSfl8 | Transposase |
| SBO_RS25345 () | 82852..83121 | - | 270 | Protein_101 | IS3 family transposase ISEc48 | Transposase |
| SBO_RS30330 () | 83236..83874 | - | 639 | WP_000607008.1 | hypothetical protein | VF |
| SBO_RS28975 () | 84072..85281 | + | 1210 | Protein_103 | IS3 family transposase | - |
| SBO_RS25375 () | 85650..87104 | + | 1455 | WP_011379078.1 | hypothetical protein | VF |
| SBO_RS28990 () | 87442..88598 | + | 1157 | WP_094096646.1 | IS3 family transposase IS600 | Transposase |
| SBO_RS29865 () | 88642..88809 | + | 168 | Protein_106 | IS3 family transposase | - |
| SBO_RS29870 () | 88827..88958 | - | 132 | Protein_107 | IS110 family transposase | - |
| SBO_RS25400 () | 90266..90913 | + | 648 | Protein_109 | IS3-like element IS911 family transposase | - |
| SBO_RS25410 () | 91598..91816 | + | 219 | WP_000813626.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| SBO_RS25415 () | 91818..92123 | + | 306 | WP_001159860.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| SBO_RS29875 () | 92147..92254 | + | 108 | WP_023592908.1 | transposase domain-containing protein | - |
| SBO_RS25425 () | 92516..94153 | + | 1638 | WP_000936800.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| SBO_RS25430 () | 94361..94630 | + | 270 | WP_000079956.1 | hypothetical protein | - |
| SBO_RS30625 () | 94627..94799 | + | 173 | Protein_115 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SBO_RS25435 () | 94863..95560 | - | 698 | Protein_116 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS29005 () | 95767..95883 | + | 117 | WP_004996477.1 | hypothetical protein | - |
| SBO_RS25445 () | 96247..97089 | + | 843 | WP_000931198.1 | polysaccharide deacetylase family protein | - |
| SBO_RS25910 () | 97092..98180 | + | 1089 | WP_005059238.1 | putative hexosyltransferase CapU | - |
| SBO_RS25455 () | 98185..99135 | + | 951 | WP_005059240.1 | virulence factor VirK | - |
| SBO_RS25460 () | 99200..100144 | + | 945 | WP_005027201.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| SBO_RS25465 () | 100298..100969 | - | 672 | Protein_122 | IS630 family transposase IS630 | Transposase |
| SBO_RS25470 () | 100985..101682 | - | 698 | Protein_123 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS25480 () | 101738..102211 | + | 474 | Protein_124 | conjugal transfer protein TraD | - |
| SBO_RS25485 () | 102220..102618 | - | 399 | WP_000911318.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| SBO_RS25490 () | 102618..102845 | - | 228 | WP_000450530.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| SBO_RS29015 () | 102927..103346 | + | 420 | WP_011379081.1 | Multifunctional conjugation protein TraI | Relaxase |
| SBO_RS25500 () | 103333..108204 | + | 4872 | WP_024258817.1 | Multifunctional conjugation protein TraI | Relaxase |
| SBO_RS25505 () | 108224..108970 | + | 747 | WP_000205722.1 | conjugal transfer pilus acetylase TraX | - |
| SBO_RS25510 () | 109025..109585 | + | 561 | WP_005056178.1 | fertility inhibition protein FinO | - |
| SBO_RS25515 () | 109716..109928 | + | 213 | WP_011379083.1 | ANR family transcriptional regulator | - |
| SBO_RS25520 () | 110172..110633 | + | 462 | WP_001233866.1 | thermonuclease family protein | - |
| SBO_RS25525 () | 110679..110888 | + | 210 | WP_001299729.1 | hemolysin expression modulator Hha | - |
| SBO_RS25530 () | 110927..111517 | + | 591 | WP_000766820.1 | DUF2726 domain-containing protein | - |
| SBO_RS25535 () | 111757..112017 | + | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| SBO_RS25540 () | 112241..112315 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| SBO_RS25545 () | 112308..113165 | + | 858 | WP_000130973.1 | incFII family plasmid replication initiator RepA | - |
| SBO_RS25550 () | 114218..114481 | - | 264 | Protein_138 | IS110 family transposase IS1663 | Transposase |
| SBO_RS25555 () | 114653..115852 | - | 1200 | WP_000947197.1 | IS91 family transposase | - |
| SBO_RS30340 () | 115862..116050 | - | 189 | WP_000957844.1 | hypothetical protein | - |
| SBO_RS25565 () | 116158..116412 | - | 255 | Protein_141 | IS3 family transposase IS1203 | Transposase |
| SBO_RS25570 () | 116804..118258 | + | 1455 | WP_000701107.1 | hypothetical protein | VF |
| SBO_RS25575 () | 118397..119605 | - | 1209 | WP_000198550.1 | IS91 family transposase | - |
| SBO_RS25580 () | 119586..119858 | - | 273 | WP_000019158.1 | hypothetical protein | - |
| SBO_RS25585 () | 120130..120432 | + | 303 | WP_010921625.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| SBO_RS25590 () | 120423..120905 | + | 483 | WP_000405246.1 | GNAT family N-acetyltransferase | Toxin Detail |
| SBO_RS29040 () | 120973..121496 | + | 524 | Protein_147 | IS3 family transposase ISSfl11 | Transposase |
| SBO_RS25600 () | 121539..121877 | - | 339 | Protein_148 | IS3 family transposase IS629 | Transposase |
| SBO_RS29050 () | 121951..123119 | + | 1169 | WP_094096507.1 | IS3 family transposase IS911 | Transposase |
| SBO_RS25615 () | 123143..123835 | - | 693 | WP_000625262.1 | hypothetical protein | VF |
| SBO_RS29055 () | 123891..124043 | + | 153 | Protein_151 | IS3 family transposase | - |
| SBO_RS30035 () | 124280..124417 | - | 138 | WP_011378983.1 | hypothetical protein | - |
| SBO_RS25630 () | 125379..126326 | + | 948 | WP_005005342.1 | Outer membrane protease IcsP | VF |
| SBO_RS30040 () | 126295..126462 | - | 168 | WP_000165219.1 | IS3 family transposase IS629 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|