MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 52137 bp
Accession: NC_005126 Location: 2130712..2182848 Organism: Photorhabdus luminescens subsp. laumondii TTO1 Replicon: chromosome
Accession: NC_005126 Location: 2130712..2182848 Organism: Photorhabdus luminescens subsp. laumondii TTO1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PLU_RS08925 (plu1781) | 2126139..2126552 | + | 414 | WP_011146059.1 | CoA-binding protein | - |
| PLU_RS08930 (plu1784) | 2128483..2128803 | - | 321 | WP_011146062.1 | heat shock protein HspQ | - |
| PLU_RS08935 (plu1785) | 2129027..2129305 | + | 279 | WP_011146063.1 | acylphosphatase | - |
| PLU_RS08940 (plu1786) | 2129319..2129648 | - | 330 | WP_041380794.1 | sulfurtransferase TusE | - |
| PLU_RS25230 (plu1787) | 2129981..2130220 | + | 240 | WP_125043751.1 | hypothetical protein | - |
| PLU_RS08950 (plu1788) | 2131018..2132043 | + | 1026 | WP_011146066.1 | IS630 family transposase ISPlu3 | Transposase |
| PLU_RS08955 (plu1789) | 2132247..2132786 | + | 540 | WP_011146067.1 | hypothetical protein | - |
| PLU_RS26585 (plu1790) | 2133557..2133691 | + | 135 | Protein_1766 | subtype I-F CRISPR-associated endonuclease Cas1 | - |
| PLU_RS08960 (plu1791) | 2133688..2136969 | + | 3282 | WP_011146068.1 | type I-F CRISPR-associated helicase Cas3 | - |
| PLU_RS08965 (plu1792) | 2137063..2137323 | + | 261 | WP_011146069.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| PLU_RS08970 (plu1793) | 2138003..2139361 | + | 1359 | WP_011146070.1 | type I-F CRISPR-associated protein Csy1 | - |
| PLU_RS08975 (plu1794) | 2139358..2140326 | + | 969 | WP_011146071.1 | type I-F CRISPR-associated protein Csy2 | - |
| PLU_RS08980 (plu1795) | 2140350..2141363 | + | 1014 | WP_011146072.1 | type I-F CRISPR-associated protein Csy3 | - |
| PLU_RS08985 (plu1796) | 2141373..2141927 | + | 555 | WP_011146073.1 | type I-F CRISPR-associated endoribonuclease Cas6/Csy4 | - |
| PLU_RS08990 (plu1799) | 2143512..2144339 | - | 828 | WP_011146076.1 | 5-deoxy-glucuronate isomerase | - |
| PLU_RS08995 (plu1800) | 2144387..2145277 | - | 891 | WP_011146077.1 | myo-inosose-2 dehydratase | - |
| PLU_RS09000 (plu1801) | 2145307..2147211 | - | 1905 | WP_011146078.1 | 5-dehydro-2-deoxygluconokinase | - |
| PLU_RS09005 (plu1802) | 2147287..2148420 | - | 1134 | WP_011146079.1 | Gfo/Idh/MocA family oxidoreductase | - |
| PLU_RS09010 (plu1803) | 2148955..2150658 | - | 1704 | WP_041380033.1 | solute:sodium symporter family transporter | - |
| PLU_RS09015 (plu1804) | 2150774..2151760 | - | 987 | WP_011146081.1 | inositol 2-dehydrogenase | - |
| PLU_RS09020 (plu1805) | 2152126..2154060 | - | 1935 | WP_198408808.1 | 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | - |
| PLU_RS09025 (plu1806) | 2154077..2155588 | - | 1512 | WP_011146083.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| PLU_RS09030 (plu1807) | 2155892..2156725 | + | 834 | WP_011146084.1 | MurR/RpiR family transcriptional regulator | - |
| PLU_RS09035 (plu1808) | 2156934..2157293 | + | 360 | WP_011146085.1 | hypothetical protein | - |
| PLU_RS09040 (plu1809) | 2157563..2157898 | + | 336 | WP_011146086.1 | tRNA-binding protein | - |
| PLU_RS09045 (plu1810) | 2157955..2158662 | + | 708 | WP_011146087.1 | HTH-type transcriptional activator RhaS | VF |
| PLU_RS09050 (plu1811) | 2158730..2159017 | + | 288 | WP_011146088.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PLU_RS09055 (plu1812) | 2159032..2159358 | + | 327 | WP_011146089.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| PLU_RS09060 (plu1813) | 2159566..2161104 | - | 1539 | WP_011146090.1 | peptide MFS transporter | - |
| PLU_RS09065 (plu1814) | 2161828..2162769 | - | 942 | WP_011146091.1 | Lipid A biosynthesis lauroyltransferase | VF |
| PLU_RS09070 (plu1815) | 2163056..2163292 | + | 237 | WP_011146092.1 | DinI family protein | - |
| PLU_RS09075 (plu1816) | 2163536..2164594 | + | 1059 | WP_011146093.1 | rhodanese-related sulfurtransferase | - |
| PLU_RS09080 (plu1817) | 2164640..2165242 | - | 603 | WP_011146094.1 | response regulator transcription factor | - |
| PLU_RS09085 (plu1818) | 2165446..2165700 | - | 255 | WP_011146095.1 | biofilm formation regulator BssS | - |
| PLU_RS09090 (plu1819) | 2165893..2166945 | - | 1053 | WP_011146096.1 | dihydroorotase | - |
| PLU_RS09095 (plu1820) | 2167336..2168220 | - | 885 | WP_011144786.1 | IS982 family transposase ISPlu6 | Transposase |
| PLU_RS09100 (plu1821) | 2168567..2169415 | + | 849 | WP_011146097.1 | hypothetical protein | - |
| PLU_RS09105 | 2169579..2169797 | + | 219 | WP_041380034.1 | AlpA family transcriptional regulator | - |
| PLU_RS09110 (plu1822) | 2169955..2170272 | + | 318 | WP_041380798.1 | hypothetical protein | - |
| PLU_RS09115 (plu1823) | 2170360..2170671 | + | 312 | WP_011146099.1 | hypothetical protein | - |
| PLU_RS09120 (plu1824) | 2170746..2171714 | - | 969 | WP_011145223.1 | IS30 family transposase ISPlu1 | Transposase |
| PLU_RS09125 | 2171836..2172132 | + | 297 | Protein_1800 | hypothetical protein | - |
| PLU_RS09130 (plu1825) | 2172089..2172436 | + | 348 | Protein_1801 | IS4 family transposase ISPlu9 | Transposase |
| PLU_RS09135 | 2172451..2172768 | + | 318 | Protein_1802 | hypothetical protein | - |
| PLU_RS09140 | 2172778..2173053 | + | 276 | WP_041380036.1 | membrane protein | - |
| PLU_RS09145 (plu1827) | 2173094..2174968 | - | 1875 | WP_011146101.1 | KAP family NTPase | - |
| PLU_RS09150 (plu1828) | 2175029..2176543 | - | 1515 | WP_011146102.1 | MobA/MobL family protein | - |
| PLU_RS09155 (plu1830) | 2177344..2177733 | + | 390 | WP_011146104.1 | hypothetical protein | - |
| PLU_RS09160 (plu1831) | 2177726..2178043 | + | 318 | WP_011146105.1 | conjugal transfer protein TraD | - |
| PLU_RS09165 (plu1833) | 2178378..2179391 | - | 1014 | WP_109791488.1 | hypothetical protein | - |
| PLU_RS09170 (plu1834) | 2179414..2180979 | - | 1566 | WP_162096539.1 | hypothetical protein | - |
| PLU_RS09175 (plu1836) | 2181726..2182811 | + | 1086 | WP_011146110.1 | DUF4297 domain-containing protein | - |
| PLU_RS09180 (plu1837) | 2182871..2184604 | + | 1734 | WP_011146111.1 | hypothetical protein | - |
| PLU_RS09185 (plu1838) | 2184688..2185951 | - | 1264 | Protein_1812 | integrase arm-type DNA-binding domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Photorhabdus laumondii subsp. laumondii strain DSPV002N | Integrative and Conjugative Element | TA62840 | NZ_CP015281 | 2130712..2182848 | 0.004 | |
| Photorhabdus laumondii subsp. laumondii strain TT01 | Integrative and Conjugative Element | TA89201 | NZ_CP024901 | 2130713..2182849 | 0 |