SecReT4

T4SS
References

T4SS ID	575
Strain	Escherichia coli APEC O1
Replicon	plasmid pAPEC-O1-R [Browse all T4SS(s) in this replicon]
Accession	NC_009838
Location	1998..11636; 31511..40294; 159533..177838
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	0	1

The information of T4SS components from NC_009838
Region 1: 1998..11636

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	APECO1_O1R1 (repA)	1..876 [+], 876	157412015	hypothetical protein
2	APECO1_O1R2 (htdZ)	1998..2378 [+], 381	157412016	HtdZ	TraA_F
3	APECO1_O1R3 (trhL)	2396..2746 [+], 351	157412017	TrhL	TraL_F
4	APECO1_O1R4 (trhE)	2758..3546 [+], 789	157412018	TrhE	TraE_F
5	APECO1_O1R5 (trhK)	3543..4817 [+], 1275	157412019	TrhK	TraK_F
6	APECO1_O1R6 (htdO)	4819..5280 [+], 462	157412020	HtdO
7	APECO1_O1R7 (trhB)	5258..6625 [+], 1368	157412021	hypothetical protein	TraB_F
8	APECO1_O1R8 (htdV)	6633..7115 [+], 483	157412022	HtdV
9	APECO1_O1R9 (htdT)	7006..7986 [+], 981	157412023	HtdT
10	APECO1_O1R10 (trhV)	7996..8946 [+], 951	157412024	TrhV	TraV_F
11	APECO1_O1R11 (trhC)	8955..11636 [+], 2682	157412025	TrhC	TraC_F

Region 2: 31511..40294

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	APECO1_O1R26 (trhF)	31012..31524 [+], 513	157412039	TrhF
2	APECO1_O1R27 (trhW)	31511..33022 [+], 1512	157412040	TrhW	TraW_F
3	APECO1_O1R28 (trhU)	33062..34222 [+], 1161	157412041	TrhU	TraU_F
4	APECO1_O1R29 (trhN)	34241..37429 [+], 3189	157412042	conjugal transfer mating pair stabilization protein TraN	TraN_F
5	APECO1_O1R30	37458..38330 [-], 873	157412043	hypothetical protein
6	APECO1_O1R31 (trhI)	38510..40294 [+], 1785	157412044	TrhI	TraI_F
7	APECO1_O1R32	40689..41561 [+], 873	157412045	hypothetical protein
8	APECO1_O1R33	41619..41996 [+], 378	157412046	hypothetical protein
9	APECO1_O1R34	42057..43034 [+], 978	157412047	hypothetical protein
10	APECO1_O1R35	43092..44150 [+], 1059	157412048	putative ATP-binding protein

Region 3: 159533..177838

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	APECO1_O1R136 (mucB)	154871..156130 [+], 1260	157412151	UV protection and repair protein
2	APECO1_O1R137	156176..156985 [-], 810	157412152	hypothetical protein
3	APECO1_O1R138	157092..157703 [+], 612	157412153	hypothetical protein
4	APECO1_O1R139	157763..158185 [-], 423	157412154	hypothetical protein
5	APECO1_O1R140	158219..158617 [-], 399	157412155	hypothetical protein
6	APECO1_O1R141 (dsbC)	158636..159385 [-], 750	157412156	DsbC
7	APECO1_O1R142	159533..160072 [+], 540	157412157	putative pilin biogenesis protein	Orf169_F
8	APECO1_O1R143	160203..160721 [+], 519	157412158	hypothetical protein
9	APECO1_O1R144	160829..162118 [-], 1290	157412159	hypothetical protein
10	APECO1_O1R145 (trhG)	162299..166252 [-], 3954	157412160	inner membrane protein	TraG_F
11	APECO1_O1R146 (trhH)	166261..167739 [-], 1479	157412161	pilus assembly protein	TraH_F
12	APECO1_O1R147 (trhF)	167666..168712 [-], 1047	157412162	pilus assembly protein	TraF_F
13	APECO1_O1R148 (trhY)	169306..169818 [-], 513	157412163	plasmid transfer protein
14	APECO1_O1R149 (trhR)	169820..170620 [-], 801	157412164	plasmid transfer protein
15	APECO1_O1R150 (traH)	171379..171864 [+], 486	157412165	plasmid transfer protein
16	APECO1_O1R151	171861..172598 [+], 738	157412166	hypothetical protein
17	APECO1_O1R152 (traI)	172602..175754 [+], 3153	157412167	hypothetical protein
18	APECO1_O1R153 (traG)	175754..177838 [+], 2085	157412168	hypothetical protein	TraD_F
19	APECO1_O1R154	177838..178947 [+], 1110	157412169	hypothetical protein
20	APECO1_O1R155 (traJ)	178916..179596 [+], 681	157412170	hypothetical protein
21	APECO1_O1R156	179607..180788 [+], 1182	157412171	hypothetical protein
22	APECO1_O1R157	180790..181521 [+], 732	157412172	hypothetical protein
23	APECO1_O1R158	181808..182170 [-], 363	157412173	hypothetical protein
24	APECO1_O1R159	182227..182511 [-], 285	157412174	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Johnson TJ; Wannemeuhler YM; Scaccianoce JA; Johnson SJ; Nolan LK (2006). Complete DNA sequence, comparative genomics, and prevalence of an IncHI2 plasmid occurring among extraintestinal pathogenic Escherichia coli isolates. Antimicrob Agents Chemother. 50(11):3929-33. [PudMed:16940062]