SecReT4

T4SS
References

T4SS ID	560
Strain	Orientia tsutsugamushi str. Ikeda
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_010793
Location	1942394..1963342
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	0	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	0	0	0	1	0	1	1	0	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	1	0

The information of T4SS components from NC_010793

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	OTT_1901 (ndk)	1938003..1938428 [-], 426	189184808	nucleoside diphosphate kinase
2	OTT_1902	1940379..1941518 [+], 1140	189184809	integrase
3	OTT_1903	1941521..1941991 [+], 471	189184810	peroxiredoxin, AhpC/TSA family protein
4	OTT_1904	1942059..1942394 [+], 336	189184811	hypothetical protein
5	OTT_1905	1942394..1942945 [+], 552	189184812	conjugative transfer protein TraE	TraE_F
6	OTT_1906	1942942..1943418 [+], 477	189184813	hypothetical protein
7	OTT_1907	1943783..1944112 [+], 330	189184814	hypothetical protein
8	OTT_1908	1944431..1945249 [+], 819	189184815	conjugative transfer protein TraB	TraB_F
9	OTT_1909	1945299..1945481 [+], 183	189184816	conjugative transfer protein TraB
10	OTT_1910	1945481..1945810 [+], 330	189184817	hypothetical protein	TraV_F
11	OTT_1911	1945791..1947593 [+], 1803	189184818	conjugative transfer protein TraC	TraC_F
12	OTT_1912	1947492..1948502 [-], 1011	189184819	ankyrin repeat-containing protein 06_04
13	OTT_1913	1948657..1949244 [+], 588	189184820	conjugative transfer protein TraU	TraU_F
14	OTT_1914	1949267..1949650 [+], 384	189184821	conjugative transfer protein TrbC	TrbC_F
15	OTT_1915	1949647..1951341 [+], 1695	189184822	conjugative transfer protein TraN	TraN_F
16	OTT_1916	1951498..1952676 [+], 1179	189184823	ankyrin repeat-containing protein 04_02
17	OTT_1917	1952880..1953602 [+], 723	189184824	conjugative transfer protein TraF	TraF_F
18	OTT_1918	1953599..1953745 [+], 147	189184825	conjugative transfer protein TraH
19	OTT_1919	1953827..1954492 [+], 666	189184826	conjugative transfer protein TraH	TraH_F
20	OTT_1920	1954506..1954901 [+], 396	189184827	conjugative transfer protein TraH
21	OTT_1921	1954901..1955236 [+], 336	189184828	conjugative transfer protein TraG	TraG_F
22	OTT_1922	1955413..1956375 [+], 963	189184829	transposase
23	OTT_1923	1956391..1956951 [-], 561	189184830	transposase
24	OTT_1924	1957003..1958208 [-], 1206	189184831	conjugative transfer protein TraI
25	OTT_1925	1958389..1959453 [+], 1065	189184832	hypothetical protein
26	OTT_1926	1959757..1960581 [-], 825	189184833	conjugative transfer protein TraA
27	OTT_1927	1960596..1962608 [-], 2013	189184834	conjugative transfer protein TraA	TraI_F
28	OTT_1928	1962887..1963342 [+], 456	189184835	conjugative transfer protein TraD	TraD_F
29	OTT_1929	1963410..1964432 [-], 1023	189184836	hypothetical protein
30	OTT_1930	1964553..1965128 [-], 576	189184837	RelA/SpoT-related protein
31	OTT_1931	1965149..1965547 [-], 399	189184838	hypothetical protein
32	OTT_1932	1965569..1966297 [-], 729	189184839	hypothetical protein
33	OTT_1933	1966664..1966963 [+], 300	189184840	N6 adenine-specific DNA-methyltransferase
34	OTT_1934	1967373..1968248 [-], 876	189184841	transposase

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Nakayama K; Yamashita A; Kurokawa K; Morimoto T; Ogawa M; Fukuhara M; Urakami H; Ohnishi M; Uchiyama I; Ogura Y; Ooka T; Oshima K; Tamura A; Hattori M; Hayashi T (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]