SecReT4

T4SS
References

T4SS ID	526
Strain	Novosphingobium aromaticivorans plasmid pNL1 (NC_002033)
Replicon	plasmid pNL1 [Browse all T4SS(s) in this replicon]
Accession	NC_002033
Location	90847..125874
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
Experimental investigation has been performed on this T4SS.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	0	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	1	1

The information of T4SS components from NC_002033

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pNL1_p084 (orf659)	87091..87834 [-], 744	10956912	hypothetical protein
2	pNL1_p085 (orf666)	87971..89014 [+], 1044	10956913	hypothetical protein
3	pNL1_p086 (orf679)	89068..89451 [+], 384	10956914	hypothetical protein
4	pNL1_p087 (orf680)	89448..89759 [+], 312	10956915	hypothetical protein
5	pNL1_p088 (orf681)	89819..90265 [+], 447	10956916	hypothetical protein
6	pNL1_p089 (orf690)	90570..90860 [+], 291	10956917	hypothetical protein
7	pNL1_p090 (traD)	90847..93177 [+], 2331	10956918	Conjugal DNA metabolism	TraD_F
8	pNL1_p091 (orf704)	93181..96222 [+], 3042	10956919	DNA helicase	TraI_F
9	pNL1_p092 (orf721)	96464..96667 [+], 204	10956920	hypothetical protein
10	pNL1_p093 (orf724)	96687..97043 [+], 357	10956921	hypothetical protein
11	pNL1_p094 (orf729)	97152..99593 [+], 2442	10956922	hypothetical protein
12	pNL1_p095 (orf753)	99699..99914 [+], 216	10956923	hypothetical protein
13	pNL1_p096 (orf756)	100124..100345 [+], 222	10956924	hypothetical protein
14	pNL1_p097 (orf758)	100348..101148 [-], 801	10956925	regulator
15	pNL1_p098 (orf766)	101252..101968 [+], 717	10956926	hypothetical protein
16	pNL1_p099 (orf771)	102073..102294 [+], 222	10956927	hypothetical protein
17	pNL1_p100 (isA)	102735..103681 [+], 947	10956930	transposase, fusion orf777 and orf780
18	pNL1_p101 (isAb)	102735..103121 [+], 387	10956928	transposase N-terminus
19	pNL1_p102 (isAa)	103208..103681 [+], 474	10956929	transposase C-terminus
20	pNL1_p103 (traG)	103653..106391 [-], 2739	10956931	sex pilus assembly and mating pair stabilization protein	TraG_F
21	pNL1_p104 (traH)	106404..107858 [-], 1455	10956932	pilus assembly and synthesis protein	TraH_F
22	pNL1_p105 (traF)	107858..108670 [-], 813	10956933	pilus assembly and synthesis protein	TraF_F
23	pNL1_p106 (orf816)	108667..109077 [-], 411	10956934	hypothetical protein
24	pNL1_p107 (traN)	109058..111172 [-], 2115	10956935	mating pair stabilization protein	TraN_F
25	pNL1_p108 (trbC)	111174..111938 [-], 765	10956936	sex pilus assembly and mating pair formation protein	TrbC_F
26	pNL1_p109 (traU)	111947..112969 [-], 1023	10956937	sex pilus assembly and synthesis protein	TraU_F
27	pNL1_p110 (orf843)	112966..113232 [-], 267	10956938	hypothetical protein
28	pNL1_p111 (traW)	113229..113924 [-], 696	10956939	sex pilus assembly and synthesis protein	TraW_F
29	pNL1_p112 (orf851)	113921..115027 [-], 1107	10956940	Conjugal transfer protein
30	pNL1_p113 (orf857)	115017..115379 [-], 363	10956941	hypothetical protein
31	pNL1_p114 (traC)	115376..117946 [-], 2571	10956942	sex pilus assembly and synthesis protein	TraC_F
32	pNL1_p115 (orf876)	118097..119140 [-], 1044	10956943	hypothetical protein	TraV_F
33	pNL1_p116 (orf883)	119137..120033 [-], 897	10956944	protein disulfide-isomerase
34	pNL1_p117 (traB)	120044..121420 [-], 1377	10956945	sex pilus assembly and synthesis protein	TraB_F
35	pNL1_p118 (traK)	121420..122214 [-], 795	10956946	sex pilus assembly and synthesis protein	TraK_F
36	pNL1_p119 (traE)	122214..122837 [-], 624	10956947	sex pilus assembly and synthesis protein	TraE_F
37	pNL1_p120 (traL)	122851..123135 [-], 285	10956948	sex pilus assembly and synthesis protein	TraL_F
38	pNL1_p121 (orf912)	123201..123515 [-], 315	10956949	hypothetical protein
39	pNL1_p122 (orf916)	123680..124213 [+], 534	10956951	hypothetical protein
40	pNL1_p123 (orf915)	124303..124824 [+], 522	10956950	hypothetical protein
41	pNL1_p124 (orf921)	124835..125110 [+], 276	10956952	hypothetical protein
42	pNL1_p125 (orf925)	125077..125874 [-], 798	10956953	transglycosylase	Orf169_F
43	pNL1_p126 (orf933)	126055..126723 [-], 669	10956954	hypothetical protein
44	pNL1_p127 (orf938)	126716..127414 [-], 699	10956955	hypothetical protein
45	pNL1_p128 (orf942)	127407..127799 [-], 393	10956956	hypothetical protein
46	pNL1_p129 (orf946)	127877..128887 [-], 1011	10956957	hypothetical protein
47	pNL1_p130 (bphA2e)	128947..129444 [-], 498	10956958	small subunit aromatic oxygenase
48	pNL1_p131 (bphA1e)	129441..130616 [-], 1176	10956959	large subunit aromatic oxygenase

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Romine MF; Stillwell LC; Wong KK; Thurston SJ; Sisk EC; Sensen C; Gaasterland T; Fredrickson JK; Saffer JD (1999). Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199. J Bacteriol. 181(5):1585-602. [PudMed:10049392]