SecReT4

T4SS
References

T4SS ID	224
Strain	Sinorhizobium fredii NGR234
Replicon	plasmid pNGR234b [Browse all T4SS(s) in this replicon]
Accession	NC_012586
Location	990745..1013114
Name	VirB
Function	conjugation
Classification	Type IVA; Type P
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	1	1	1	1	1	1	1	1	1
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_012586

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	NGR_b10170	985848..986036 [-], 189	227819252	Yle-like protein
2	NGR_b10180	986124..986273 [-], 150	227819253	hypothetical protein
3	NGR_b10190	986749..987042 [-], 294	227819254	hypothetical protein
4	NGR_b10200	987211..988494 [-], 1284	227819255	transposase
5	NGR_b10210	988791..989033 [-], 243	227819256	hypothetical protein
6	NGR_b10220	989253..989612 [-], 360	227819257	hypothetical protein
7	NGR_b10230	989757..990134 [-], 378	227819258	hypothetical protein
8	NGR_b10240	990224..990745 [+], 522	227819259	hypothetical protein
9	NGR_b10250 (virB1)	990745..991359 [+], 615	227819260	VirB1 type IV secretion protein	VirB1
10	NGR_b10260 (virB2)	991356..991658 [+], 303	227819261	VirB2 type IV secretion protein	VirB2
11	NGR_b10270 (virB3)	991663..992001 [+], 339	227819262	VirB3 type IV secretion protein	VirB3
12	NGR_b10280 (virB4)	991994..994351 [+], 2358	227819263	VirB4 type IV secretion protein	VirB4
13	NGR_b10290 (virB5)	994351..995046 [+], 696	227819264	VirB5 type IV secretion protein	VirB5
14	NGR_b10300	995043..995276 [+], 234	227819265	hypothetical protein
15	NGR_b10310 (virB6)	995281..996195 [+], 915	227819266	VirB6 type IV secretion protein	VirB6
16	NGR_b10320 (virB7)	996195..996524 [+], 330	227819267	VirB7 type IV secretion related protein	VirB7
17	NGR_b10330 (virB8)	996528..997199 [+], 672	227819268	VirB8 type IV secretion protein	VirB8
18	NGR_b10340 (virB9)	997223..998065 [+], 843	227819269	VirB9 type IV secretion protein	VirB9
19	NGR_b10350 (virB10)	998062..999228 [+], 1167	227819270	VirB10 transmembrane type IV secretion protein	VirB10
20	NGR_b10360 (virB11)	999242..1000237 [+], 996	227819271	VirB11 type IV secretion protein	VirB11
21	NGR_b10370	1000493..1000891 [-], 399	227819272	hypothetical protein
22	NGR_b10380	1000996..1002186 [+], 1191	227819273	hypothetical protein
23	NGR_b10390	1002491..1003681 [-], 1191	227819274	hypothetical protein
24	NGR_b10400	1003988..1004167 [+], 180	227819275	hypothetical protein
25	NGR_b10410	1004182..1005219 [+], 1038	227819276	hypothetical protein
26	NGR_b10420	1005540..1006481 [+], 942	227819277	hypothetical protein
27	NGR_b10430	1006517..1007206 [+], 690	227819278	hypothetical protein
28	NGR_b10440	1007306..1007707 [-], 402	227819279	PIN domain signalling protein
29	NGR_b10450	1007704..1007964 [-], 261	227819280	virulence-associated protein
30	NGR_b10460	1008280..1008567 [+], 288	227819281	hypothetical protein
31	NGR_b10470	1008930..1009196 [+], 267	227819282	hypothetical protein
32	NGR_b10480	1009193..1009591 [+], 399	227819283	hypothetical protein
33	NGR_b10490	1009604..1009825 [+], 222	227819284	hypothetical protein
34	NGR_b10500	1010205..1010528 [+], 324	227819285	hypothetical protein
35	NGR_b10510	1010654..1011190 [-], 537	227819286	hypothetical protein
36	NGR_b10520 (traG)	1011201..1013114 [-], 1914	227819287	conjugal transfer coupling protein TraG	VirD4
37	NGR_b10530 (traD)	1013105..1013344 [-], 240	227819288	TraD conjugal transfer protein
38	NGR_b10540 (traC)	1013334..1013621 [-], 288	227819289	TraC conjugal transfer protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Schmeisser C; Liesegang H; Krysciak D; Bakkou N; Le Quere A; Wollherr A; Heinemeyer I; Morgenstern B; Pommerening-Roser A; Flores M; Palacios R; Brenner S; Gottschalk G; Schmitz RA; Broughton WJ; Perret X; Strittmatter AW; Streit WR (2009). Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems. Appl Environ Microbiol. 75(12):4035-45. [PudMed:19376903]