Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL079_RS08715 Genome accession   NZ_LR134283
Coordinates   1743227..1744645 (+) Length   472 a.a.
NCBI ID   WP_108720868.1    Uniprot ID   -
Organism   Streptococcus anginosus strain NCTC10713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1738227..1749645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS08685 (NCTC10713_01778) galU 1738590..1739489 (-) 900 WP_003032212.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EL079_RS08690 (NCTC10713_01779) - 1739518..1740534 (-) 1017 WP_003032228.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  EL079_RS08700 (NCTC10713_01780) - 1740787..1741476 (+) 690 WP_026248191.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  EL079_RS08705 (NCTC10713_01781) - 1741699..1742730 (+) 1032 WP_003032205.1 S66 peptidase family protein -
  EL079_RS08710 (NCTC10713_01782) - 1742824..1743267 (+) 444 WP_003032208.1 dUTP diphosphatase -
  EL079_RS08715 (NCTC10713_01783) radA 1743227..1744645 (+) 1419 WP_108720868.1 DNA repair protein RadA Machinery gene
  EL079_RS08720 (NCTC10713_01784) gltX 1744853..1746310 (+) 1458 WP_003032210.1 glutamate--tRNA ligase -
  EL079_RS08725 (NCTC10713_01785) dapD 1746425..1747123 (+) 699 WP_003032231.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  EL079_RS08730 (NCTC10713_01786) - 1747136..1748266 (+) 1131 WP_003032211.1 N-acetyldiaminopimelate deacetylase -
  EL079_RS08735 (NCTC10713_01787) - 1748311..1748838 (+) 528 WP_003032207.1 5-formyltetrahydrofolate cyclo-ligase -
  EL079_RS08740 (NCTC10713_01788) - 1748831..1749511 (+) 681 WP_003032222.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51529.27 Da        Isoelectric Point: 5.8417

>NTDB_id=999954 EL079_RS08715 WP_108720868.1 1743227..1744645(+) (radA) [Streptococcus anginosus strain NCTC10713]
MVCGQVVLEARGIKKEESIIAKKKTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEVTEVKNARVSLTGEKSRPMKLAE
VTSINVNRTKTDMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHKGTVLYVSGEESAEQIKLRAERLGDID
SEFYLYAETNMQSIRAEIEKIKPDFLIIDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLA
GPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTR
PILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDL
PTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLNIPETIEVIGVTTIGEVLKKVFG

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=999954 EL079_RS08715 WP_108720868.1 1743227..1744645(+) (radA) [Streptococcus anginosus strain NCTC10713]
ATGGTGTGCGGACAGGTGGTTTTGGAAGCACGGGGCATTAAGAAAGAGGAATCTATCATAGCCAAGAAAAAAACGACATT
TGTTTGTCAAAATTGTGAATACCATTCGCCCAAGTATCTGGGGCGTTGTCCTAACTGTGGGGCTTGGTCGTCCTTTGTCG
AAGAGGTCGAAGTTACGGAGGTTAAGAATGCGCGTGTTTCTCTGACAGGGGAAAAAAGTCGACCGATGAAGTTAGCAGAG
GTGACTTCTATCAATGTCAACCGTACCAAGACAGATATGGAAGAGTTTAACCGCGTCTTGGGCGGTGGCGTGGTGCCAGG
AAGTTTAGTTCTAATCGGAGGAGACCCAGGTATTGGGAAATCTACCCTTTTATTGCAGGTTTCGACCCAACTCTCTCACA
AAGGAACGGTCTTGTATGTCAGTGGGGAAGAGTCTGCCGAGCAGATTAAGCTGCGCGCGGAACGTTTAGGCGATATTGAC
AGTGAGTTTTATCTCTATGCTGAGACCAATATGCAGAGTATTCGTGCTGAGATTGAAAAAATCAAACCAGATTTTTTGAT
TATAGATTCCATTCAGACGATTCTATCGCCAGAAATTTCCAGCGTGCAAGGGTCGGTTTCGCAAGTGCGAGAAGTGACAG
CGGAGCTGATGCAGCTGGCAAAGACCAACAATATTGCCACCTTTATCGTCGGTCATATGACGAAAGAGGGCACTCTGGCT
GGACCTAGAACTTTGGAACATATGGTGGATACAGTACTTTATTTTGAGGGTGAGCGTCAACATACTTTTCGTATTTTGCG
AGCGGTTAAAAACCGCTTCGGCTCTACGAATGAAATCGGTATTTTTGAAATGCAGTCAGGTGGTCTGGTTGAAGTACTCA
ATCCTAGCCAGGTTTTCTTAGAGGAGCGTTTAGATGGAGCGACAGGCTCTTCTATCGTGGTGACTATGGAGGGGACGCGT
CCAATCCTTGCGGAAGTGCAGGCTTTGGTGACGCCGACCATGTTTGGCAATGCCAAGCGGACAACGACAGGATTGGATTT
CAATCGTGCTAGTCTGATTATGGCTGTTTTGGAAAAGCGAGCAGGGTTATTATTGCAAAATCAAGATGCCTACCTCAAGT
CAGCAGGCGGTGTCAAATTGGATGAGCCAGCCATTGACTTAGCTGTTGCTGTCGCAATTGCTTCTAGTTATAAAGATTTG
CCAACGAATCCACAAGAATGTTTTATTGGTGAAATCGGTCTGACGGGCGAAATCCGCCGTGTCAATCGCATTGAGCAGCG
TATCAATGAAGCTGCTAAGCTGGGCTTCACCAAAGTTTACGCTCCTAAAAACTCTCTGAACGGGTTGAACATTCCCGAAA
CTATTGAAGTTATTGGTGTGACAACGATTGGTGAAGTGTTGAAGAAGGTGTTTGGGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-237)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(27-54)

Subunit ChlI of Mg-chelatase (ChlI)

(380-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

92.257

95.763

0.883
  radA Streptococcus pneumoniae D39

92.257

95.763

0.883
  radA Streptococcus pneumoniae R6

92.257

95.763

0.883
  radA Streptococcus pneumoniae TIGR4

92.257

95.763

0.883
  radA Streptococcus mitis SK321

92.257

95.763

0.883
  radA Streptococcus mitis NCTC 12261

92.035

95.763

0.881
  radA/sms Bacillus subtilis subsp. subtilis str. 168

62.582

96.822

0.606