Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EL079_RS07175 Genome accession   NZ_LR134283
Coordinates   1469102..1469875 (-) Length   257 a.a.
NCBI ID   WP_003032065.1    Uniprot ID   -
Organism   Streptococcus anginosus strain NCTC10713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1464102..1474875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS07160 (NCTC10713_01475) purC 1466999..1467706 (-) 708 WP_003032064.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  EL079_RS07165 (NCTC10713_01476) - 1467865..1468110 (-) 246 WP_003032071.1 acyl carrier protein -
  EL079_RS07170 (NCTC10713_01477) plsX 1468107..1469105 (-) 999 WP_003032056.1 phosphate acyltransferase PlsX -
  EL079_RS07175 (NCTC10713_01478) recO 1469102..1469875 (-) 774 WP_003032065.1 DNA repair protein RecO Machinery gene
  EL079_RS07180 (NCTC10713_01479) - 1469853..1471040 (-) 1188 WP_003032048.1 pyridoxal phosphate-dependent aminotransferase -
  EL079_RS07185 (NCTC10713_01480) - 1471192..1472160 (-) 969 WP_003032055.1 ribose-phosphate diphosphokinase -
  EL079_RS07190 (NCTC10713_01481) pcsB 1472293..1473519 (-) 1227 WP_003032078.1 peptidoglycan hydrolase PcsB -
  EL079_RS07195 (NCTC10713_01482) mreD 1473629..1474129 (-) 501 WP_003032067.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29909.26 Da        Isoelectric Point: 5.6003

>NTDB_id=999938 EL079_RS07175 WP_003032065.1 1469102..1469875(-) (recO) [Streptococcus anginosus strain NCTC10713]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVIQPLVVADFLMKINDDGLSYIDDYQEVTTFQ
HINHDLFAMAYATYVVALADASIQDNEIDSALFAFLQKTLELMEQGLDYEVLTNIFEIQILSRFGVSLNFHECCFCHRVG
LPFDFSFTYNGVLCPEHYGKDERRSHLDPNIPYLLDQFQAVQYSELETISLNPELKRQLRKVIDQIYEEYVGIHLKPKKF
IDSLGDWGEILKNKESK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=999938 EL079_RS07175 WP_003032065.1 1469102..1469875(-) (recO) [Streptococcus anginosus strain NCTC10713]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAATCGTAATTTCCGAGAAAATGATAAGCTGGTCAAAATTTT
CACAGAGCAGGCTGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCAGTTATCCAACCATTGG
TAGTGGCCGATTTTTTGATGAAAATAAATGATGACGGTTTGAGTTATATCGATGATTATCAAGAGGTTACGACTTTCCAG
CATATCAATCATGATTTGTTTGCAATGGCTTATGCGACTTATGTGGTAGCTCTAGCGGACGCTAGTATTCAGGATAATGA
AATAGATTCGGCTCTCTTTGCTTTTTTGCAAAAAACGTTGGAATTGATGGAGCAGGGCTTGGATTATGAGGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCACGTTTTGGTGTTTCTTTGAATTTCCATGAATGCTGCTTTTGCCACCGAGTAGGG
CTACCGTTTGATTTTTCCTTTACTTATAATGGCGTTTTATGTCCGGAACATTATGGCAAAGATGAGCGACGGAGTCATTT
GGATCCCAACATTCCTTATTTATTAGACCAATTTCAAGCGGTTCAATATAGTGAATTGGAGACCATTTCTTTGAATCCTG
AGTTAAAACGACAATTACGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAGCCCAAAAAATTT
ATTGATTCTCTGGGAGACTGGGGAGAAATTTTAAAGAACAAGGAGTCGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-236)

Recombination protein O N terminal (RecO_N)

(4-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

75.294

99.222

0.747

Multiple sequence alignment