Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABFU06_RS06130 Genome accession   NZ_CP155938
Coordinates   1460506..1460907 (+) Length   133 a.a.
NCBI ID   WP_011038048.1    Uniprot ID   Q8P6P2
Organism   Xanthomonas campestris pv. raphani strain Xcc-R1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1455506..1465907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU06_RS06110 (ABFU06_06090) tsaB 1456586..1457305 (+) 720 WP_115540771.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  ABFU06_RS06115 (ABFU06_06095) - 1457305..1458228 (+) 924 WP_228944932.1 ADP-ribosylglycohydrolase family protein -
  ABFU06_RS06120 (ABFU06_06100) - 1458446..1459321 (-) 876 WP_115577462.1 energy transducer TonB -
  ABFU06_RS06125 (ABFU06_06105) gshB 1459318..1460268 (-) 951 WP_228431948.1 glutathione synthase -
  ABFU06_RS06130 (ABFU06_06110) pilG 1460506..1460907 (+) 402 WP_011038048.1 twitching motility response regulator PilG Regulator
  ABFU06_RS06135 (ABFU06_06115) - 1460925..1461287 (+) 363 WP_011038047.1 PleD family two-component system response regulator -
  ABFU06_RS06140 (ABFU06_06120) - 1461287..1461817 (+) 531 WP_014508568.1 chemotaxis protein CheW -
  ABFU06_RS06145 (ABFU06_06125) - 1461857..1463893 (+) 2037 WP_011038045.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14676.05 Da        Isoelectric Point: 6.3482

>NTDB_id=999933 ABFU06_RS06130 WP_011038048.1 1460506..1460907(+) (pilG) [Xanthomonas campestris pv. raphani strain Xcc-R1]
MTENMAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVNA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=999933 ABFU06_RS06130 WP_011038048.1 1460506..1460907(+) (pilG) [Xanthomonas campestris pv. raphani strain Xcc-R1]
ATGACTGAAAACATGGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTTATCGATGATTCGAAGACCATTCGCCG
CACTGCTGAAACGCTGCTCAAGCGCGAAGGCTGTGAAGTGGTGACAGCGACGGACGGATTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTCGTGGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAGTCGACGCCGGTGATCATGTTGTCGTCCAAGGATGGCCTGTTTGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTCACCCGTGAAGAACTACTGAGCGCGATCCGTACGTACGTCAACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P6P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment