Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EL078_RS05575 Genome accession   NZ_LR134282
Coordinates   1091632..1093371 (-) Length   579 a.a.
NCBI ID   WP_126437905.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1086632..1098371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS05550 (NCTC8140_01121) - 1086846..1087343 (+) 498 WP_021142477.1 DUF308 domain-containing protein -
  EL078_RS09345 (NCTC8140_01122) queF 1087382..1087873 (-) 492 WP_021142478.1 preQ(1) synthase -
  EL078_RS09350 (NCTC8140_01123) queE 1087889..1088602 (-) 714 WP_186330482.1 7-carboxy-7-deazaguanine synthase QueE -
  EL078_RS05560 (NCTC8140_01124) queD 1088595..1089041 (-) 447 WP_024343959.1 6-carboxytetrahydropterin synthase QueD -
  EL078_RS05565 (NCTC8140_01125) queC 1089041..1089694 (-) 654 WP_004232125.1 7-cyano-7-deazaguanine synthase QueC -
  EL078_RS05570 (NCTC8140_01126) rcrQ 1089860..1091629 (-) 1770 WP_126437904.1 ABC transporter ATP-binding protein Regulator
  EL078_RS05575 (NCTC8140_01127) rcrP 1091632..1093371 (-) 1740 WP_126437905.1 ABC transporter ATP-binding protein Regulator
  EL078_RS05580 (NCTC8140_01128) - 1093415..1095283 (-) 1869 WP_126437906.1 ABC-F family ATP-binding cassette domain-containing protein -
  EL078_RS05585 (NCTC8140_01129) - 1095280..1096485 (-) 1206 WP_126437907.1 CCA tRNA nucleotidyltransferase -
  EL078_RS05590 (NCTC8140_01130) dapB 1096482..1097249 (-) 768 WP_004232139.1 4-hydroxy-tetrahydrodipicolinate reductase -
  EL078_RS05595 (NCTC8140_01131) - 1097270..1098118 (-) 849 WP_021142488.1 DegV family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65024.48 Da        Isoelectric Point: 7.0803

>NTDB_id=999826 EL078_RS05575 WP_126437905.1 1091632..1093371(-) (rcrP) [Streptococcus equinus strain NCTC8140]
MKLIWTYLKKYPKWLILDVVGALTFVLVNLGLPTALARMIDQGVTPGNKERVYFWAIVMFAIIVIGTVGRVVLAYAAGKI
TTNMIKDMRNDMYDKLQQYSHHEYEQIGVSSLVTRMTSDAFILTQFAEQSLRMGVITPLMMVSSVVMILLTSPSLAWIVA
VAIPFLILVVYYVATKTRPLSEKQQATLDKINQYVRENLTGLRVIRAFAREDFQEKRFDSKNEEYKDLSSRLFILTGLTE
PLFVLIIISMIVSIVWFALNPLTSGALQIGNLVAFIEYSFHALFSFLLFANLFTMYPRMVVSSERISEVMNMPISINPNE
DGVTETQTKGYLEFDKVTFAYPGETESPVLKDISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGKILVDGVDVRD
YQLKALRQKIGFIPQKALLFTGTIEENLKYGKADATNFELQEAADVAQAKEFIESRDERYQTHLAEGGSNLSGGQKQRLS
IARAVVKKPDIYIFDDSFSALDYKTDAQLRARLKEVTHNSTVLIVAQRVGTIMNADQIIVLDKGEIVGRGTHDELMQSND
IYREIANSQLKNVDGMKGE

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=999826 EL078_RS05575 WP_126437905.1 1091632..1093371(-) (rcrP) [Streptococcus equinus strain NCTC8140]
ATGAAACTAATTTGGACTTATTTGAAAAAATATCCCAAATGGCTAATTCTTGATGTTGTCGGAGCTTTAACTTTTGTGTT
GGTTAACTTAGGTTTGCCAACAGCTCTAGCTCGAATGATTGACCAAGGGGTAACACCTGGAAATAAAGAACGTGTTTATT
TTTGGGCGATTGTTATGTTTGCCATCATTGTCATTGGTACTGTTGGGCGTGTTGTACTTGCTTATGCGGCGGGTAAAATC
ACAACTAATATGATTAAAGATATGCGTAATGATATGTATGATAAATTACAACAATATTCACACCATGAATATGAACAAAT
TGGTGTGTCTTCCCTTGTTACGCGTATGACGAGCGATGCTTTCATCTTGACACAATTTGCTGAGCAGTCACTTCGAATGG
GTGTGATTACACCTTTGATGATGGTTTCTAGTGTTGTTATGATTTTGCTGACAAGTCCGTCGTTAGCATGGATTGTAGCA
GTTGCCATTCCATTTTTGATTTTAGTTGTTTATTATGTGGCAACTAAGACACGTCCATTATCTGAAAAACAACAAGCAAC
TCTAGATAAAATTAACCAATATGTTCGTGAAAATTTAACTGGCTTGCGCGTTATTCGTGCATTTGCTAGAGAAGATTTCC
AAGAAAAACGTTTTGATTCGAAAAACGAAGAATACAAAGATTTATCAAGTCGTCTCTTTATTTTGACAGGATTGACTGAG
CCGCTGTTTGTTTTGATTATCATTTCAATGATTGTCTCAATTGTCTGGTTTGCTTTGAACCCGTTAACCAGCGGTGCTTT
GCAAATCGGTAACCTAGTTGCCTTCATTGAGTATAGTTTCCACGCATTATTCTCATTCTTGCTTTTTGCCAATTTATTTA
CTATGTATCCAAGAATGGTTGTTTCAAGTGAACGTATTTCTGAAGTTATGAATATGCCAATCTCTATCAATCCGAATGAA
GATGGTGTAACTGAAACACAAACAAAAGGTTATTTGGAATTTGACAAGGTTACATTCGCTTATCCTGGCGAAACAGAAAG
CCCGGTCTTAAAAGACATTTCCTTCAAGGCAAAACCTGGTGAAACCATTGCCTTTATCGGGTCAACTGGTTCTGGTAAAT
CTTCTCTTGTGAATCTGATTCCACGTTTTTACGATGTCACACTTGGTAAAATCTTAGTGGACGGTGTTGATGTTAGAGAT
TATCAGTTGAAAGCACTTCGTCAAAAAATTGGTTTTATTCCTCAAAAAGCTTTGCTATTTACGGGAACAATCGAGGAAAA
CTTAAAATATGGTAAGGCTGACGCAACAAACTTTGAGTTGCAAGAAGCTGCTGATGTTGCGCAGGCAAAAGAATTTATTG
AAAGCCGAGATGAACGTTATCAGACACACTTAGCAGAGGGCGGAAGCAATTTGTCTGGTGGTCAAAAACAACGTTTGTCA
ATTGCGCGTGCGGTTGTTAAGAAACCTGATATTTACATTTTTGATGATTCATTCTCAGCTCTTGATTATAAGACTGATGC
GCAGTTGCGTGCTCGTTTAAAAGAGGTTACACATAATTCGACGGTCTTAATTGTTGCTCAACGTGTTGGTACTATCATGA
ATGCTGACCAAATTATCGTTCTTGATAAGGGTGAAATTGTAGGTCGTGGTACGCACGACGAATTGATGCAATCAAATGAC
ATTTATCGTGAAATTGCTAATTCACAGTTGAAAAATGTAGATGGAATGAAAGGAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(26-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.416

94.646

0.373

Multiple sequence alignment