Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EL078_RS05570 Genome accession   NZ_LR134282
Coordinates   1089860..1091629 (-) Length   589 a.a.
NCBI ID   WP_126437904.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084860..1096629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS05545 (NCTC8140_01120) gdhA 1085267..1086616 (-) 1350 WP_021142476.1 NADP-specific glutamate dehydrogenase -
  EL078_RS05550 (NCTC8140_01121) - 1086846..1087343 (+) 498 WP_021142477.1 DUF308 domain-containing protein -
  EL078_RS09345 (NCTC8140_01122) queF 1087382..1087873 (-) 492 WP_021142478.1 preQ(1) synthase -
  EL078_RS09350 (NCTC8140_01123) queE 1087889..1088602 (-) 714 WP_186330482.1 7-carboxy-7-deazaguanine synthase QueE -
  EL078_RS05560 (NCTC8140_01124) queD 1088595..1089041 (-) 447 WP_024343959.1 6-carboxytetrahydropterin synthase QueD -
  EL078_RS05565 (NCTC8140_01125) queC 1089041..1089694 (-) 654 WP_004232125.1 7-cyano-7-deazaguanine synthase QueC -
  EL078_RS05570 (NCTC8140_01126) rcrQ 1089860..1091629 (-) 1770 WP_126437904.1 ABC transporter ATP-binding protein Regulator
  EL078_RS05575 (NCTC8140_01127) rcrP 1091632..1093371 (-) 1740 WP_126437905.1 ABC transporter ATP-binding protein Regulator
  EL078_RS05580 (NCTC8140_01128) - 1093415..1095283 (-) 1869 WP_126437906.1 ABC-F family ATP-binding cassette domain-containing protein -
  EL078_RS05585 (NCTC8140_01129) - 1095280..1096485 (-) 1206 WP_126437907.1 CCA tRNA nucleotidyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66208.45 Da        Isoelectric Point: 5.3923

>NTDB_id=999825 EL078_RS05570 WP_126437904.1 1089860..1091629(-) (rcrQ) [Streptococcus equinus strain NCTC8140]
MEKRNVFLRLWDYLRNYKGSLFLAIFLKIFSGIMSVLEPFVLGLAITELTANLLDMARGVSGAHINTTYIAIILVLYFIR
GFGYEIGSYGSNFFMTKAVQKTIHDLRRDLSEKINKIPVSYFDSQQFGNVLGRFTSDVETVSNALQQSFLQIINAFVTIF
AVMFMVFYLNWKLALIVVAIIPINYFSAKFILKKSQPYFKKQADTLGDMNGFVQENLSGFNVIKLYGREEISSEEFRDIT
ENLQEVGFKASFISGIMMPVLSAISDMAYLLVAMLSALQVLAGALTIGNMQAFVQYVWQISQPVQTITQLASILQSAKSS
LERIFEVLDEPEEAAEVKEQLTHDLSGQVTFEDVSFQYTPDKPLIRNFSLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTGGSIKIDGHDIRNLSRQEYRKQFGMVLQDAWLYEATIKENLRFGNLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNVSLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMEKLMHGRTSFVIAHRLSTIQDADKILVLNNGQ
IVEQGNHESLLAAKGFYYDLYNSQFAKNS

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=999825 EL078_RS05570 WP_126437904.1 1089860..1091629(-) (rcrQ) [Streptococcus equinus strain NCTC8140]
ATGGAAAAACGAAATGTATTTTTACGTTTATGGGATTATCTCCGCAATTATAAAGGCTCACTTTTCTTAGCGATTTTTCT
TAAAATTTTTAGTGGTATTATGAGTGTGTTGGAGCCTTTCGTACTTGGTCTTGCAATCACCGAATTAACAGCAAACTTAC
TTGATATGGCTCGAGGTGTTTCTGGCGCACATATCAATACAACTTATATTGCGATTATTTTGGTACTGTATTTTATTCGT
GGATTTGGTTATGAAATTGGTTCATACGGCTCAAACTTCTTTATGACTAAAGCGGTGCAAAAAACGATTCATGATTTGCG
TCGTGATTTGAGTGAAAAAATCAATAAAATTCCAGTTTCATATTTTGATAGCCAACAATTTGGTAATGTTTTGGGACGTT
TCACATCTGATGTCGAAACAGTGTCAAACGCTCTTCAACAAAGTTTCTTGCAAATTATCAATGCTTTTGTAACGATTTTT
GCAGTTATGTTTATGGTTTTCTACCTTAACTGGAAATTAGCTTTGATTGTTGTAGCCATTATTCCGATTAATTATTTTAG
TGCTAAGTTCATTTTGAAAAAATCTCAGCCGTATTTCAAAAAACAAGCCGATACGCTTGGAGATATGAATGGTTTTGTTC
AGGAAAATCTTTCTGGCTTCAACGTTATTAAGTTATATGGTCGTGAAGAAATTTCAAGTGAAGAATTTCGAGACATTACA
GAAAATCTGCAAGAAGTAGGTTTTAAAGCAAGTTTCATTTCTGGGATTATGATGCCTGTTTTAAGTGCAATTTCAGATAT
GGCTTACTTACTCGTTGCCATGCTCAGTGCGCTTCAAGTATTAGCAGGTGCTTTGACAATTGGTAACATGCAGGCTTTTG
TTCAATACGTTTGGCAAATTAGCCAGCCAGTTCAAACGATTACGCAACTGGCAAGTATTCTACAAAGTGCAAAATCATCA
CTAGAACGTATCTTTGAAGTTCTTGATGAGCCAGAAGAAGCAGCTGAAGTCAAAGAACAATTGACACATGATTTGTCTGG
TCAAGTCACTTTTGAGGATGTTTCTTTCCAATACACACCTGACAAACCACTCATCCGTAACTTTAGTCTTGACGTCAAAC
CAGGAGAAATGGTTGCAATTGTTGGTCCAACGGGTGCTGGTAAGACAACCTTGATTAATCTGTTGATGAGATTTTACGAT
GTCACTGGTGGTTCAATTAAAATTGATGGTCATGACATTCGGAATCTATCACGTCAGGAATATCGTAAGCAGTTTGGTAT
GGTCTTGCAAGATGCTTGGCTTTATGAAGCAACGATTAAAGAAAATCTCCGTTTTGGTAATCTTGATGCGACTGATGAAG
AAATTGTTGAAGCTGCTAAAGCCGCAAATGTTGACCACTTTATTCGCACCCTTCCTGGTGGATACAACATGGAAATGAAT
CAAGAATCAAGTAATGTTTCTCTTGGTCAAAAACAATTATTAACAATTGCGCGTGCTCTTCTAGCAGATCCAAAAATTCT
GATTCTGGATGAAGCGACATCTTCAGTTGATACACGATTGGAATTGCTTATCCAAAAAGCAATGGAAAAATTGATGCATG
GCAGAACAAGCTTTGTCATTGCTCACCGTTTGTCTACTATTCAAGATGCTGACAAAATTCTTGTTTTGAACAATGGTCAA
ATTGTTGAACAAGGAAATCATGAAAGCTTACTTGCTGCTAAAGGATTCTATTATGACCTTTACAATAGCCAGTTTGCTAA
AAACAGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.441

99.66

0.433