Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   EL076_RS08380 Genome accession   NZ_LR134275
Coordinates   1664619..1667939 (-) Length   1106 a.a.
NCBI ID   WP_126430020.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1659619..1672939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS08370 - 1660432..1660876 (-) 445 Protein_1567 helix-turn-helix domain-containing protein -
  EL076_RS08375 (NCTC12167_01647) rexA 1660976..1664629 (-) 3654 WP_126430018.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EL076_RS08380 (NCTC12167_01648) rexB 1664619..1667939 (-) 3321 WP_126430020.1 ATP-dependent nuclease subunit B Machinery gene
  EL076_RS08385 (NCTC12167_01649) - 1668189..1668506 (-) 318 WP_232009640.1 GHKL domain-containing protein -
  EL076_RS08390 (NCTC12167_01650) - 1668931..1669962 (-) 1032 WP_126430022.1 S66 peptidase family protein -
  EL076_RS08395 (NCTC12167_01651) - 1670074..1670754 (-) 681 WP_126430024.1 hypothetical protein -
  EL076_RS08400 (NCTC12167_01652) - 1670759..1671205 (-) 447 WP_003094625.1 LytTR family DNA-binding domain-containing protein -
  EL076_RS08405 (NCTC12167_01653) - 1671418..1672404 (-) 987 WP_126430026.1 TcaA 3rd/4th domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126106.68 Da        Isoelectric Point: 4.9916

>NTDB_id=999732 EL076_RS08380 WP_126430020.1 1664619..1667939(-) (rexB) [Streptococcus vestibularis strain NCTC12167]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLEYLPQSASFDITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMGDDDLKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQVEKQEDLVRIFSAAQDLLLA
GNFDNQSKLSAFFKEITSGHLDEALGNTVLVIDGFTRFSAEEEALVALLNDKCHQIVIGTYASQKAYRANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNLSFARISRLLESRHDFSTVDEKVTEQDKHALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLLQFVDSLERIKRYNYHTEDLLNLVKSGLYGGFTQ
EDLDFFEYYVNFADIKGRHKFLSDFTANSRDKYDLDKLNGLRLQLVEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSKM
AALTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDD
MSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDVDLDKDTQTFWSVAVRYLRKRLDKDQVLIPT
VIDDVTTTKVDEQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFEILYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDAAQLFGAMYLHMQDPQLNLAKFGLDKLAAQAHK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKKDLETLLDYNIKLFTSAAEVIRSGNFAVNPYTEDGKSVQGDQIKAITHF
EADRHMGQARKLLRLPSKGKKEAYLELMAKDEDDNEMQVAEKIIPFPVTDQAVTADKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=999732 EL076_RS08380 WP_126430020.1 1664619..1667939(-) (rexB) [Streptococcus vestibularis strain NCTC12167]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCGACTAGCTATGCTCAAAAAGG
AAAGAGGGTTTTTTATATTGCCCCTAATGCTCTATCCTTTGAAAAGGAGCGAAAGGTTTTAGAATACCTGCCTCAGTCAG
CATCTTTTGACATTACGGTGACTCGTTTTACTCAGATGGCTAGGTATTTTATTCTCAATACGAGTAACCCAAAGACTCAG
TTGGATGATACAGGTTTGGCCATGATTTTTTATAAGGTGTTGTCGCACATGGGTGACGATGATCTAAAGGTTTATGGTCG
TTTGCGCAAGGATAGCAACTTTATTAATCAATTGGTGGACCTTTATAAAGAGTTGCAGCAGGCCAATATGACGGTTCTGG
ATTTGCAGCATTTGGATCAGGTTGAAAAACAAGAGGATTTGGTAAGGATTTTCAGTGCCGCTCAGGACCTCTTGTTGGCA
GGGAATTTTGACAATCAATCAAAGCTTAGTGCCTTTTTTAAGGAAATTACCTCAGGACATCTGGATGAAGCCCTGGGCAA
CACGGTTTTGGTCATTGATGGCTTTACCCGCTTCTCGGCTGAGGAGGAGGCCCTAGTTGCACTCTTGAACGACAAGTGCC
ATCAGATTGTCATTGGAACTTATGCCAGTCAAAAAGCTTATAGGGCTAACTTTGTTTATGGCAATGTTTATCAGGCCTCA
GTGGATTTTTTGAGAACTTTGGCTCAGACCTATAAGGTGACACCCGACTACGTGACGACAGACAAGGAGGGCAATCTTTC
TTTTGCGCGTATTAGTCGTCTTTTGGAGAGCCGTCATGACTTTAGTACGGTAGATGAGAAGGTAACTGAGCAGGATAAGC
ATGCCCTGCAGGTTTGGGAAGTGGTCAACCAGAAAGAAGAAGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTGCTGGCG
GATGGCAAGCGCTACAAGGATATCTTGGTCCTGCTTGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGGCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTCGGTAAGGAAGAAACCATGTCTAGCCATCCTTTGTTACAGTTTGTGGATTCGTTGG
AACGTATCAAGCGCTATAACTACCATACCGAGGATTTGCTTAATCTCGTAAAATCCGGTCTTTATGGTGGTTTTACTCAA
GAGGATTTAGACTTTTTTGAGTATTATGTCAATTTTGCAGATATCAAGGGGCGCCATAAGTTCTTGTCTGATTTTACAGC
TAACAGTCGTGATAAGTATGATTTAGACAAGCTCAATGGATTAAGGTTACAGCTGGTAGAGCCCTTGGACAAATTGCTTA
ATAGTCGCAAACAAAAGGGATCTAGTCTACTCAAGAAACTAGTGGTCTTTTTAGAGGCTGTGCAAGTGCCAAGTAAGATG
GCTGCTTTGACTGCCAAGGCCAGTGAGGCTGAAAAAGAACAGAATGAACAAGTCTGGAAGGCTTTCACACAACTCTTGGA
GCAGGTTGAGACTATTTTTGGTGAAGAAACACTGTCAGTGGACGACTTTTTGTCCATTTTGCGTTCAGGAATGTTGGCCT
GTGATTACCGTACGGTTCCAGCCACTGTTGATGTGGTCAATGTGAAAAAATATGATTTGATCCAGCCACATTCGGCTCCG
TATGTTTTTGCTTTGGGGATGACCCAGTCACACTTTCCTAAGGTAGGGCAAAATAAGAGTCTCCTATCTGACGAGGAACG
TAGTCGTATCAATGAGGCGACGGATGAACACAGGAGCTTGGATATTGTTACGCAGAGCAATAGTCAGCGGGGGCATTTTG
TGGCTATGTCACTTTTTAATGCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACTCAAGATGAC
ATGTCGGTTTATTTGAAGGAGCTGCTTGACCTTGGTCTTCCTTTGGTTGAAAAGGGACGCAATCGTTTCGAGGCCAAGGG
TGACCAGATTGGGAACTATAGAGACCTTCTGTCGACTGTCATTGCCCTTAACAGTAGTCATTTGGATGTAGATTTGGACA
AGGACACCCAGACTTTCTGGTCAGTTGCTGTACGTTATCTCCGTAAACGACTTGATAAGGATCAAGTCTTGATTCCAACG
GTGATAGATGATGTGACGACGACCAAGGTGGATGAACAGGTCATGCAGCTGGTTTTTCCGGGGGAGGAACCACTGAAATT
ATCAGCTTCTGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGGACTTGAAGAGTTGG
AGTCTATTCATCCAGATGCTCGACACCACGGAACTTACTTGCACCGTGTCTTTGAGCGTGTGATGGGTGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACTAATCAGGAACAACCCTTTGAAATTCTCTATACAGAGGA
CCAAGAGAGTCGCTTGTCTCGTCAGATCTTGGAAGATATCGCTCGTTCAACTGCCAGTGTTTTGCGTGACAATGCGGCGG
TTAAGGTTGAGCGTGAGGAAGCTAAGTTTGACTTACTTTTAGCAAATAGCATCAAAATTACAGGGATTATTGACCGAGTG
GACCGTTTAACGGATGGGGCTCTGGGTGTCGTTGACTACAAGTCAGGTAAAAATGTCTTTGACATTCAGAAATTCTATAA
TGGCCTCAGTCCGCAGTTGGTGACCTATCTGGAGGCCCTTCGCCAAACCTATAAGGTTGATGCTGCTCAGCTTTTTGGGG
CCATGTATCTTCACATGCAGGACCCACAGCTTAACCTAGCTAAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTCATAAG
GAATTGACCTATAAGGGACTTTTTGTGGCTTCAGAAACAGAGCATCTAGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTATGACAAGAAGGACCTAGAAACCTTGCTAGACTACAATATCAAGCTCTTTACAAGTGCTGCTGAAGTTATTAGAA
GCGGGAATTTCGCGGTCAATCCTTATACCGAGGATGGCAAGTCTGTTCAAGGAGATCAAATCAAGGCAATTACTCATTTT
GAGGCCGACCGACACATGGGACAGGCTCGAAAACTCTTGCGTTTACCAAGTAAGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGGCAAAAGATGAGGACGATAATGAGATGCAAGTTGCTGAAAAAATCATCCCCTTTCCAGTCACTGATCAAGCTGTAA
CAGCAGACAAAAAAGACCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.842

98.373

0.431

Multiple sequence alignment