Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EL076_RS07030 Genome accession   NZ_LR134275
Coordinates   1410851..1412155 (-) Length   434 a.a.
NCBI ID   WP_064519010.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405851..1417155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS07010 (NCTC12167_01381) fmt 1406174..1407109 (-) 936 WP_126429845.1 methionyl-tRNA formyltransferase -
  EL076_RS07015 (NCTC12167_01382) priA 1407127..1409523 (-) 2397 WP_126429847.1 primosomal protein N' Machinery gene
  EL076_RS07020 (NCTC12167_01383) rpoZ 1409665..1409979 (-) 315 WP_003093276.1 DNA-directed RNA polymerase subunit omega -
  EL076_RS07025 (NCTC12167_01384) gmk 1410001..1410630 (-) 630 WP_003094729.1 guanylate kinase -
  EL076_RS07030 (NCTC12167_01385) pilA 1410851..1412155 (-) 1305 WP_064519010.1 signal recognition particle-docking protein FtsY Machinery gene
  EL076_RS07035 (NCTC12167_01386) - 1412166..1412984 (-) 819 WP_003094472.1 Cof-type HAD-IIB family hydrolase -
  EL076_RS07040 (NCTC12167_01387) - 1412977..1413771 (-) 795 WP_126429849.1 HAD-IIB family hydrolase -
  EL076_RS07045 (NCTC12167_01388) - 1413953..1414330 (+) 378 WP_003094041.1 GntR family transcriptional regulator -
  EL076_RS07050 (NCTC12167_01389) - 1414335..1415033 (+) 699 WP_003094313.1 ABC transporter ATP-binding protein -
  EL076_RS07055 (NCTC12167_01390) - 1415045..1415830 (+) 786 WP_126429851.1 ABC transporter permease -
  EL076_RS07060 (NCTC12167_01391) - 1415881..1416810 (-) 930 WP_126429853.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 48238.11 Da        Isoelectric Point: 4.2747

>NTDB_id=999713 EL076_RS07030 WP_064519010.1 1410851..1412155(-) (pilA) [Streptococcus vestibularis strain NCTC12167]
MGLFDRLFGQEENQSQETVANQEFSETEALDNQDLSTSESQAEQLSESETQVEEISSTESVEESESTVTEESQVTVDNHF
ADVMADYYAKKAQVAAAAEKGETVTFEAVQTRKVEEKTEEVQASKTETEQEKYNRTLKKTRTGFAARLNEFFANFRRVDE
EFFEELEEMLILSDVGVNVATQLTEDLRYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYKEHINFQDGLTVMLFVGVNG
VGKTTSIGKLAHKYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEKADPASVVFDGMEKALAEDVDVLMIDT
AGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLALDASTGQNALSQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQE
LDIPVKLIGFGEKIDDIGEFHSEEFMQGLLTGLV

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=999713 EL076_RS07030 WP_064519010.1 1410851..1412155(-) (pilA) [Streptococcus vestibularis strain NCTC12167]
ATGGGTCTATTTGATCGATTATTTGGACAAGAGGAAAACCAGTCACAAGAAACTGTAGCAAATCAGGAATTTTCAGAAAC
TGAGGCTCTTGATAATCAAGACTTGTCAACAAGTGAAAGTCAAGCAGAACAGCTCAGTGAGTCAGAGACTCAAGTAGAAG
AGATTTCGTCTACAGAATCTGTTGAAGAAAGCGAATCTACAGTGACAGAAGAAAGCCAAGTAACTGTGGATAACCACTTT
GCGGATGTCATGGCTGATTACTATGCTAAAAAGGCTCAGGTAGCTGCTGCTGCAGAAAAAGGTGAAACAGTTACTTTTGA
GGCTGTTCAAACCCGTAAAGTTGAGGAAAAAACTGAAGAAGTTCAGGCTTCAAAAACTGAAACAGAACAAGAAAAATATA
ATCGTACCCTTAAGAAGACGCGTACAGGTTTTGCTGCCCGCCTGAATGAATTCTTTGCGAATTTCCGTCGTGTTGATGAA
GAGTTTTTCGAAGAATTGGAAGAAATGCTGATTCTTTCCGATGTAGGTGTTAATGTTGCAACGCAATTGACAGAAGACTT
ACGCTATGAAGCTCGACTTGAGAATGTCAAAAAGACTGAGGATTTGCAACGCTTGATTATTGAAAAACTTGTGGATATCT
ACGAGAAGGACGATGTTTATAAGGAGCATATTAATTTCCAAGATGGTTTGACAGTTATGCTTTTTGTTGGTGTTAATGGG
GTTGGTAAAACGACTTCTATTGGTAAGTTGGCACATAAATACAAACAAGAAGGCAAAAAAGTTATGCTGGTTGCTGCCGA
TACCTTCCGTGCGGGAGCTGTTGCCCAATTGGTCGAGTGGGGACGTCGTGTTGATGTGCCAGTAGTGACTGGTGCTGAAA
AGGCTGACCCTGCTTCAGTGGTTTTTGATGGTATGGAGAAGGCCCTTGCTGAAGATGTTGATGTTCTTATGATTGATACT
GCGGGTCGTTTACAAAACAAAGACAACCTTATGGCAGAGCTTGAAAAAATCGGCCGTATTATCAAGCGTGTGGTGCCAGA
AGCACCTCATGAAACCCTCTTGGCTTTGGATGCCTCAACAGGTCAAAATGCCCTTAGTCAGGCCAAGGAATTTTCAAAAA
TTACACCTCTTACAGGTCTTGTCTTGACTAAGTTGGATGGTAGTGCCAAGGGTGGTGTGGTTCTAGCCATTCGCCAAGAG
TTGGATATTCCAGTTAAGTTAATTGGTTTTGGTGAGAAAATTGACGACATTGGGGAGTTTCATTCAGAAGAATTCATGCA
AGGTCTCTTGACTGGATTGGTTTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(146-210)

SRP54-type protein, GTPase domain (SRP54)

(231-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

36.343

99.539

0.362

Multiple sequence alignment