Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAID08_RS18145 Genome accession   NZ_CP155917
Coordinates   4008626..4009990 (-) Length   454 a.a.
NCBI ID   WP_006396055.1    Uniprot ID   -
Organism   Achromobacter sp. EB05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4003626..4014990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAID08_RS18120 (AAID08_18105) - 4004035..4005033 (+) 999 WP_054502059.1 tripartite tricarboxylate transporter substrate binding protein -
  AAID08_RS18125 (AAID08_18110) - 4005107..4006075 (+) 969 WP_144654860.1 tripartite tricarboxylate transporter substrate binding protein -
  AAID08_RS18130 (AAID08_18115) - 4006242..4007198 (+) 957 WP_026384457.1 2-hydroxyacid dehydrogenase -
  AAID08_RS18135 (AAID08_18120) - 4007376..4007612 (-) 237 WP_054502058.1 hypothetical protein -
  AAID08_RS18140 (AAID08_18125) - 4007816..4008613 (-) 798 WP_054502057.1 sulfite exporter TauE/SafE family protein -
  AAID08_RS18145 (AAID08_18130) radA 4008626..4009990 (-) 1365 WP_006396055.1 DNA repair protein RadA Machinery gene
  AAID08_RS18150 (AAID08_18135) - 4010423..4011070 (+) 648 WP_175142874.1 hypothetical protein -
  AAID08_RS18155 (AAID08_18140) hpaR 4011185..4011628 (+) 444 WP_175142916.1 homoprotocatechuate degradation operon regulator HpaR -
  AAID08_RS18160 (AAID08_18145) hpaD 4011630..4012481 (-) 852 WP_054502055.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  AAID08_RS18165 (AAID08_18150) hpaE 4012521..4013987 (-) 1467 WP_395756727.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -
  AAID08_RS18170 (AAID08_18155) - 4014261..4014509 (+) 249 Protein_3592 4-hydroxyphenylacetate isomerase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48205.28 Da        Isoelectric Point: 6.9553

>NTDB_id=999673 AAID08_RS18145 WP_006396055.1 4008626..4009990(-) (radA) [Achromobacter sp. EB05]
MAKTRTVYVCAECGGTTPKWQGKCPHCNAWNTLEETVESAAPAAAASHRYAPLASSSPVRSLSEIEARETPRTPTGLEEF
DRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSESTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQA
AVSEQKPSVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFE
GDTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAP
NPRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPRGLIAFGEVGLAG
EIRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=999673 AAID08_RS18145 WP_006396055.1 4008626..4009990(-) (radA) [Achromobacter sp. EB05]
ATGGCCAAAACCCGAACCGTCTATGTGTGCGCCGAATGCGGCGGCACCACTCCGAAATGGCAAGGCAAGTGTCCGCACTG
CAATGCCTGGAACACCCTCGAAGAAACCGTGGAGTCGGCCGCGCCGGCCGCCGCGGCCTCGCACCGCTATGCGCCGCTGG
CCTCCAGCAGCCCGGTGCGCAGCCTGTCCGAGATCGAGGCGCGTGAAACCCCGCGCACCCCCACCGGGCTGGAGGAATTC
GACCGCGTGCTGGGCGGCGGCCTGGTGGCCGGCGCCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGACCCT
GCTGCTGCAGGCGCTGGCCTCGCTGTCCGAAAGCACCAACGTGCTCTACGTCACCGGCGAGGAATCGGCCGAGCAGGTGG
CGCTGCGCGCGCGCCGGCTGGGCCTGCAGACCGGCAACGTCAACCTGTTGGCGGAAATCCGCCTGGAGGCGATCCAGGCC
GCAGTGTCCGAGCAGAAGCCCAGCGTGGCCGTGATCGACTCGATCCAGACGCTCTACAGCGGCGAGCTGACCGCGGCGCC
CGGCTCGGTGTCGCAGGTGCGCGAGTGCGCCGCCCAATTGACGCGCCTGGCCAAGCAGACCGGCATCGCCATCGTCATGA
TTGGCCACGTCACCAAGGACGGCGCGCTGGCGGGACCACGCGTGCTCGAACACATCGTCGACACGGTGCTGTACTTCGAG
GGCGACACGCACTCGTCTTTCCGGCTGGTGCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGC
CATGACCGACCGCGGCCTGCGCGGCGTGGCCAACCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGCAGGTGGCCGGCT
CCTGCGTGATGGCCACGCAGGAGGGCACCCGCCCGCTGCTGGTCGAGATCCAGGCGCTGGTGGACAGCTCCCACGCGCCC
AATCCGCGCCGCCTGACGGTCGGCCTGGAGGGCAACCGCCTGGCGATGCTGCTGGCCGTGCTGCACCGCCATGCCGGCGT
GTCGACCTTCGACCAGGACGTGTTCGTCAACGCCGTCGGCGGGGTGCGCATCACCGAGCCCGCGGCCGACCTGCCGGTGC
TGCTGGCCATCATGTCGTCGCTGCGCGACCGGCCCCTGCCGCGCGGCCTGATCGCCTTCGGCGAAGTCGGGCTGGCGGGC
GAGATCCGGCCCGCGCCGCGCGGCCAGGAACGCCTGCGCGAAGCCGCCAAGCTGGGCTTCTCGATCGCGCTCATCCCCAA
GGCCAACGCCCCGCGCCAGCCCATCGAGGGGCTGGAGATCTGGGCGGTGGACCGGCTCGACGCCGCGCTCGACAAGTTGC
GCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.096

100

0.513
  radA Streptococcus mitis NCTC 12261

46.696

100

0.467
  radA Streptococcus pneumoniae D39

48.946

94.053

0.46
  radA Streptococcus pneumoniae TIGR4

48.946

94.053

0.46
  radA Streptococcus mitis SK321

48.946

94.053

0.46
  radA Streptococcus pneumoniae R6

48.946

94.053

0.46
  radA Streptococcus pneumoniae Rx1

48.946

94.053

0.46

Multiple sequence alignment