Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   EL086_RS08825 Genome accession   NZ_LR134274
Coordinates   1908340..1911993 (-) Length   1217 a.a.
NCBI ID   WP_038676730.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC8618     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1903340..1916993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL086_RS08805 (NCTC8618_04199) proB 1903736..1904539 (-) 804 WP_014635008.1 glutamate 5-kinase -
  EL086_RS08810 (NCTC8618_04200) - 1904659..1906248 (-) 1590 WP_038676724.1 hypothetical protein -
  EL086_RS08815 (NCTC8618_04201) - 1906251..1906982 (-) 732 WP_038676726.1 ABC transporter ATP-binding protein -
  EL086_RS08820 (NCTC8618_04202) - 1907257..1907988 (+) 732 WP_038676728.1 DUF554 domain-containing protein -
  EL086_RS08825 (NCTC8618_04203) rexA 1908340..1911993 (-) 3654 WP_038676730.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EL086_RS08830 (NCTC8618_04204) rexB 1911983..1915303 (-) 3321 WP_038676732.1 ATP-dependent nuclease subunit B Machinery gene
  EL086_RS08835 (NCTC8618_04205) - 1915552..1916925 (-) 1374 WP_022495868.1 GHKL domain-containing protein -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 138163.21 Da        Isoelectric Point: 4.7058

>NTDB_id=999619 EL086_RS08825 WP_038676730.1 1908340..1911993(-) (rexA) [Streptococcus salivarius strain NCTC8618]
MLTKAFLSPTEIEERIAQEAASDKERKLTPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYADLFNDYMQGKDAQLFQKLVRNFAGNGKTSKAFRDLVYDVYSFSQATADPEKWLRQNLLKGQAEADPVKAKHELLD
GLKGGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLRELDTQLTILEVLTKHNDDILPLLEVLQAFVLDFSDQYLQAKVQENAFEFSDIAHFAIRILEE
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSDKQKEPHPENETEVLIYNSDEASETPDEEGADQPISSGE
ISLVIKEIINLHKQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADKGQFYDKLLAAHTKSGLHPEVVTQGLEAKLTLFIETLADWRDYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQVNTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELTPEAI
GQVEVQAAVDADDLSNNRQTEDIKRALTVLESVEKLNQLYEPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQPL
ETSTSFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTELGKLILA
NRDKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTHLSELKERYKGQMSLYAKALSQAYQIDKI
DKYLILLGGKDLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=999619 EL086_RS08825 WP_038676730.1 1908340..1911993(-) (rexA) [Streptococcus salivarius strain NCTC8618]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTGAGGAACGCATTGCCCAAGAAGCAGCTTCTGACAAGGAACGCAA
GTTAACACCTGAGCAGATTGAGGCCATTTACAGTAATGGTACTAATATTCTTGTATCAGCTTCAGCCGGATCAGGAAAAA
CCTTTGTCATGGTTGAGCGTATCCTTGATATGATTGGACGTGGTGTTGGCATTGACCAACTCTTTATCTCAACCTTTACG
GTAAAGGCTGCAGGTGAGTTAAAAGAGCGTCTGGAAAAGCGTTTGACTGAGCAGCTGGGTCAGGTGGAGACAGATGAAGA
GCGTGCCTTTCTTTCAGACCAGATTGCCAAGATTGGGACAGCTGATATCGGAACCATGGATGCCTTTACCCAGAAATTGG
TCAATCAGTATGGCTATCTCCTGGGTGTCTCACCTATTTTCCGTATCATGACAGACCCTGCTGAGCAAACGCTTATGAAA
AATGAGGTTTATGCTGATCTCTTTAACGATTACATGCAAGGGAAGGATGCTCAACTCTTCCAAAAATTGGTACGTAACTT
CGCTGGAAATGGCAAGACTAGTAAGGCTTTTCGTGACCTGGTTTACGATGTTTATAGCTTTTCTCAAGCCACTGCAGACC
CTGAAAAATGGCTGCGTCAAAATCTTTTAAAAGGGCAGGCAGAGGCAGATCCAGTCAAGGCTAAACATGAGCTTTTAGAC
GGTCTCAAAGGTGGCTTGCTAGCTGATTTTCTAGCTTTCCTAAGAGACCATCTAGGCCTAGCTCAGCGTGAATTTGCCAA
GGCCAAGTATCTAAATAATGTGTCAGATGCCATTAGCCTTCTTGAAGGAGCCTTGGCCAATGACCAAACGGATATGGAGG
ACCTTCTCAAACAACTCTTGACTTTGTCAGGAGGGACTGGTTTGACCAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAAGCTTACAACAAGACCAAAAATGAGTTTGTGGCCCAGTTGCGAGAGCTTGACACCCAACTAACAATCCT
CGAGGTTTTGACCAAGCATAATGATGACATTCTTCCTCTCTTGGAGGTGCTTCAGGCCTTTGTGCTTGATTTCTCAGACC
AGTATTTACAGGCCAAGGTTCAGGAAAATGCCTTTGAATTCTCGGACATTGCCCACTTTGCCATCCGTATTCTGGAGGAA
AATCCAGAGGTAGCAGCCAGCTACCGCGACCGTTACCATGAAGTTATGGTGGATGAGTATCAGGACAATAGTCATACTCA
AGAACGCATGTTGGAGCTCCTATCTAACGGTCACAACCGATTCATGGTGGGGGATATCAAGCAGTCTATCTATCGTTTCC
GTCAGGCGGATCCTCAGATTTTTAATGGCAAGTTTCAGCTCTTCCTTGAAAATCCAGATGCAGGTAAGCTGATTCTCCTT
AAAGAGAACTTCCGTAGTCAATCTGAGGTTCTTGATGCGACTAATGGTGTTTTCAGCCACCTCATGGACCAGGAAATCGG
GGACATCCTCTATGACAAGACTCACATGCTGGTAGCGGGTAGCGATAAGCAAAAAGAACCCCATCCTGAAAATGAGACAG
AGGTTCTGATTTACAATAGTGATGAAGCGAGTGAAACTCCTGACGAAGAAGGTGCTGATCAACCTATTAGTAGCGGCGAG
ATTTCCTTGGTTATCAAAGAAATCATCAACCTTCATAAGCAGGGTGTACGTTTTGAGGATATTACCCTCCTAGCACCAAC
CCGTAACACCTATCTGGACTTGATGGCAAGCTTTGAGGAGCACGGAATTCCCTTGGTTCCTGACGAGTACAAGTCAAGCT
ACCTAGAGTCACTAGAAGTTATGATTATGTTGGATACCCTTCGTGCCATCAATAATCCTCTCAACGACTACGCCTTGGTT
GCCCTCCTTCGTTCACCGATGTTTAACTTCAACGAGGACGACCTGGCTCGGATTGCTGTCCAGGCTGACAAAGGACAATT
CTATGACAAGCTTCTTGCGGCTCATACTAAATCAGGACTTCATCCAGAAGTCGTGACGCAAGGACTGGAGGCCAAGTTGA
CTCTCTTCATTGAGACTCTGGCAGATTGGCGTGATTACAGTAAGTGGCACTCGCTCTATGACCTCATCTGGAAGATTTAC
GACGATCGTTTCTATTATGATTATGTCGGCAGTCTTCCACGAGCTGAGCAACGCCAGGCCAATCTCTACGCCCTTGCCTT
GCGTGCCAATGCCTATGAAAAGACTGGCTTTAAGGGACTTTCTCGTTTTATTGGCATGATTGATAAGATCATTTCTAGCG
GTAACGACCTAGAGGAAGTGACAGACTTGGTTCCCAAAAATGCCGTTAGCCTTATGACTATTCACAAGTCCAAGGGACTA
GAGTTCAAGTATGTCTTTGTCTTGCAGATGAATCGCAAGTTTATTGGTCACAGCAAGGATGGACTAAGTGGTAAGTATAT
TATCAACCGTGAAAAAGGACTTGGCATTAAGTATCTAGCTGATCTCAAAGACCAGGTAAACACTAATTTGCCTAAGTTAA
ATGTTGTTCTCGAGACCTTAACCTTCCAAGAAAATCGTAGGGAAGAGCGTCGAGCAAGTATCTCAGAAGAGATGCGTCTG
CTCTATGTTGCAATGACCCGTGCAGAGAAAAAACTCTACCTAGTTGGTAAGGGCAGTAAGGAGAAATTGACCCAGCAATT
TGGCACGGATGTTGAAAATAATCGCCTACCAGTAGCTCTACGTGACCAAATCGCTACTTACCAGGATTGGGTTATGGCTT
TGGATACTGCCTTTATGAGAAAGGATCTCAAGTTTACTGTTCGTTTTGTTGAGGCTGAGGAGTTGACTCCAGAGGCTATT
GGTCAGGTTGAAGTTCAAGCGGCAGTAGATGCTGATGATCTATCTAACAATCGCCAGACGGAAGACATTAAGCGTGCCCT
AACTGTCTTAGAAAGTGTTGAAAAACTCAACCAACTTTATGAACCAGCGATTGACCTGCCATCTGTGCGGACGCCCAGCC
AGCTCAAAGCCTTCTACGAACCTGTTATGGATACCGAAGGGGTGGATATTATGGACAAGAAAGAGGAGGTACAACCTCTT
GAGACATCCACTAGCTTTGAACTTCCAGATTTTGGGCAAAAAACGAAGGTCACTGGAGCTGCAGTTGGTTCAGCCACCCA
TGAACTCATGCAACGCTTGATTCTTTCTGACAAGGTGACCCTCCAAGATTTGACACAGGCCTTGAGTCGGGTATCCGCAG
ATGATCAAGTCAAGGCGCGTGTACAGTTAGAAAAGCTACTAGGCTTCTTTGACACCGAACTTGGGAAGCTCATTTTAGCT
AACCGTGATAAGTTGCGTCGTGAAGCGCCATTTGCCATGTTGGCAGAAGATCCCGCTAGTAAAGAAGACTTTGTCGTCCG
TGGTATCATTGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTATAAGACGGACCGCTTCACTCATCTTA
GTGAGCTTAAGGAACGTTACAAAGGGCAAATGAGCCTCTATGCTAAAGCACTCAGCCAAGCCTATCAAATAGATAAGATT
GATAAATACCTTATTCTCCTAGGTGGAAAAGACTTGGAAGTCGTAGAAGTATAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1059-1194)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(28-464)

UvrD-like helicase C-terminal domain (UvrD_C)

(478-894)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.102

100

0.514