Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   ABEG41_RS19305 Genome accession   NZ_CP155795
Coordinates   3718429..3719574 (+) Length   381 a.a.
NCBI ID   WP_015714890.1    Uniprot ID   -
Organism   Bacillus subtilis strain D137     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3713429..3724574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG41_RS19280 (ABEG41_19280) albF 3713444..3714724 (+) 1281 WP_003227558.1 pitrilysin family protein -
  ABEG41_RS19285 (ABEG41_19285) albG 3714721..3715422 (+) 702 WP_003227556.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  ABEG41_RS19290 (ABEG41_19290) ywhL 3715428..3716801 (-) 1374 WP_163259939.1 YncE family protein -
  ABEG41_RS19295 (ABEG41_19295) ywhK 3716844..3718199 (-) 1356 WP_182932177.1 YncE family protein -
  ABEG41_RS19300 (ABEG41_19300) - 3718196..3718426 (-) 231 WP_015714889.1 hypothetical protein -
  ABEG41_RS19305 (ABEG41_19305) rapF 3718429..3719574 (+) 1146 WP_015714890.1 response regulator aspartate phosphatase RapF Regulator
  ABEG41_RS19310 (ABEG41_19310) phrF 3719558..3719677 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  ABEG41_RS19315 (ABEG41_19315) - 3719934..3720413 (+) 480 WP_015714892.1 hypothetical protein -
  ABEG41_RS19320 (ABEG41_19320) - 3720562..3721350 (+) 789 WP_015714893.1 membrane protein -
  ABEG41_RS19325 (ABEG41_19325) - 3721337..3722011 (+) 675 WP_015714894.1 hypothetical protein -
  ABEG41_RS19330 (ABEG41_19330) - 3722021..3722818 (+) 798 WP_231573542.1 hypothetical protein -
  ABEG41_RS19335 (ABEG41_19335) - 3722821..3723468 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  ABEG41_RS19340 (ABEG41_19340) - 3723461..3724021 (+) 561 WP_015714897.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45571.01 Da        Isoelectric Point: 4.9848

>NTDB_id=999425 ABEG41_RS19305 WP_015714890.1 3718429..3719574(+) (rapF) [Bacillus subtilis strain D137]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLNLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=999425 ABEG41_RS19305 WP_015714890.1 3718429..3719574(+) (rapF) [Bacillus subtilis strain D137]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTAATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-290)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.688

100

0.987
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572

Multiple sequence alignment