Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABEG41_RS18245 Genome accession   NZ_CP155795
Coordinates   3516191..3516880 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain D137     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3511191..3521880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG41_RS18210 (ABEG41_18210) flgN 3511371..3511853 (-) 483 WP_003227999.1 flagellar protein FlgN -
  ABEG41_RS18215 (ABEG41_18215) flgM 3511869..3512135 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABEG41_RS18220 (ABEG41_18220) yvyF 3512216..3512635 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ABEG41_RS18225 (ABEG41_18225) comFC 3512709..3513431 (-) 723 WP_347002675.1 comF operon protein ComFC Machinery gene
  ABEG41_RS18230 (ABEG41_18230) comFB 3513395..3513691 (-) 297 WP_015483764.1 late competence protein ComFB -
  ABEG41_RS18235 (ABEG41_18235) comFA 3513751..3515142 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  ABEG41_RS18240 (ABEG41_18240) fakBA 3515248..3516093 (-) 846 WP_347002676.1 DegV family protein -
  ABEG41_RS18245 (ABEG41_18245) degU 3516191..3516880 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABEG41_RS18250 (ABEG41_18250) degS 3516963..3518120 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ABEG41_RS18255 (ABEG41_18255) yvyE 3518337..3518990 (+) 654 WP_003227979.1 YigZ family protein -
  ABEG41_RS18260 (ABEG41_18260) tagV 3518990..3520165 (+) 1176 WP_072173456.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ABEG41_RS18265 (ABEG41_18265) tagO 3520238..3521314 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=999420 ABEG41_RS18245 WP_003219701.1 3516191..3516880(-) (degU) [Bacillus subtilis strain D137]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=999420 ABEG41_RS18245 WP_003219701.1 3516191..3516880(-) (degU) [Bacillus subtilis strain D137]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment