Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABEG41_RS12720 Genome accession   NZ_CP155795
Coordinates   2462838..2463605 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain D137     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2457838..2468605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG41_RS12700 (ABEG41_12700) ppsR 2458013..2458825 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  ABEG41_RS12705 (ABEG41_12705) ccpN 2458851..2459489 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  ABEG41_RS12710 (ABEG41_12710) glyS 2459622..2461661 (-) 2040 WP_015714279.1 glycine--tRNA ligase subunit beta -
  ABEG41_RS12715 (ABEG41_12715) glyQ 2461654..2462541 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ABEG41_RS12720 (ABEG41_12720) recO 2462838..2463605 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  ABEG41_RS12725 (ABEG41_12725) yqzL 2463642..2463785 (-) 144 WP_003230053.1 YqzL family protein -
  ABEG41_RS12730 (ABEG41_12730) era 2463933..2464838 (-) 906 WP_003230051.1 GTPase Era -
  ABEG41_RS12735 (ABEG41_12735) cdd 2464819..2465229 (-) 411 WP_003230049.1 cytidine deaminase -
  ABEG41_RS12740 (ABEG41_12740) unpK 2465348..2465719 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  ABEG41_RS12745 (ABEG41_12745) ybeY 2465700..2466173 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  ABEG41_RS12750 (ABEG41_12750) pgpH 2466174..2468309 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=999401 ABEG41_RS12720 WP_014477369.1 2462838..2463605(-) (recO) [Bacillus subtilis strain D137]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=999401 ABEG41_RS12720 WP_014477369.1 2462838..2463605(-) (recO) [Bacillus subtilis strain D137]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment