Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABEG41_RS11185 Genome accession   NZ_CP155795
Coordinates   2193652..2194272 (+) Length   206 a.a.
NCBI ID   WP_015714153.1    Uniprot ID   A0A8E0VT51
Organism   Bacillus subtilis strain D137     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2188652..2199272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG41_RS11145 (ABEG41_11145) ypqE 2189783..2190289 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  ABEG41_RS11150 (ABEG41_11150) ypqA 2190427..2190846 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  ABEG41_RS11155 (ABEG41_11155) yppG 2190867..2191244 (-) 378 WP_014477159.1 YppG family protein -
  ABEG41_RS11160 (ABEG41_11160) yppF 2191432..2191620 (+) 189 WP_003230690.1 YppF family protein -
  ABEG41_RS11165 (ABEG41_11165) yppE 2191659..2192030 (-) 372 WP_015714151.1 YppE family protein -
  ABEG41_RS11170 (ABEG41_11170) yppD 2192076..2192321 (-) 246 WP_015251831.1 YppD family protein -
  ABEG41_RS11175 (ABEG41_11175) sspM 2192520..2192624 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ABEG41_RS11180 (ABEG41_11180) yppC 2192649..2193611 (-) 963 WP_003230679.1 DUF2515 domain-containing protein -
  ABEG41_RS11185 (ABEG41_11185) recU 2193652..2194272 (+) 621 WP_015714153.1 Holliday junction resolvase RecU Machinery gene
  ABEG41_RS11190 (ABEG41_11190) ponA 2194294..2197038 (+) 2745 WP_003230676.1 PBP1A family penicillin-binding protein -
  ABEG41_RS11195 (ABEG41_11195) ypoC 2197114..2197608 (-) 495 WP_015714154.1 YpoC family protein -
  ABEG41_RS11200 (ABEG41_11200) nth 2197605..2198264 (-) 660 WP_009967580.1 endonuclease III -
  ABEG41_RS11205 (ABEG41_11205) dnaD 2198283..2198981 (-) 699 WP_015714155.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23915.08 Da        Isoelectric Point: 9.7224

>NTDB_id=999389 ABEG41_RS11185 WP_015714153.1 2193652..2194272(+) (recU) [Bacillus subtilis strain D137]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHAHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=999389 ABEG41_RS11185 WP_015714153.1 2193652..2194272(+) (recU) [Bacillus subtilis strain D137]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGCCCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment