Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ABEG41_RS05840 Genome accession   NZ_CP155795
Coordinates   1108913..1109491 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain D137     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103913..1114491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG41_RS05820 (ABEG41_05820) hemAT 1104424..1105722 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  ABEG41_RS05825 (ABEG41_05825) yhfW 1105861..1107390 (-) 1530 WP_163260051.1 FAD-dependent oxidoreductase -
  ABEG41_RS05830 (ABEG41_05830) yhxC 1107502..1108359 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ABEG41_RS05835 (ABEG41_05835) yhzC 1108387..1108620 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ABEG41_RS05840 (ABEG41_05840) comK 1108913..1109491 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ABEG41_RS05845 (ABEG41_05845) yhxD 1109538..1110437 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  ABEG41_RS05850 (ABEG41_05850) yhjA 1110654..1110923 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  ABEG41_RS05855 (ABEG41_05855) yhjB 1110967..1112436 (-) 1470 WP_029726292.1 sodium:solute symporter -
  ABEG41_RS05860 (ABEG41_05860) yhjC 1112433..1112633 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ABEG41_RS05865 (ABEG41_05865) - 1112841..1113203 (-) 363 WP_003233132.1 hypothetical protein -
  ABEG41_RS05870 (ABEG41_05870) yhjE 1113355..1113978 (+) 624 WP_010886465.1 VTT domain-containing protein -
  ABEG41_RS05875 (ABEG41_05875) lepB 1113980..1114486 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=999370 ABEG41_RS05840 WP_003245329.1 1108913..1109491(+) (comK) [Bacillus subtilis strain D137]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=999370 ABEG41_RS05840 WP_003245329.1 1108913..1109491(+) (comK) [Bacillus subtilis strain D137]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment