Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EL071_RS03785 Genome accession   NZ_LR134265
Coordinates   710166..710927 (+) Length   253 a.a.
NCBI ID   WP_001266273.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NCTC8184     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 705166..715927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL071_RS03770 (NCTC8184_00729) - 706482..707801 (+) 1320 WP_112409719.1 CHAP domain-containing protein -
  EL071_RS03775 (NCTC8184_00730) - 707925..708893 (+) 969 WP_115357016.1 ribose-phosphate diphosphokinase -
  EL071_RS03780 (NCTC8184_00731) - 709001..710176 (+) 1176 WP_000171460.1 pyridoxal phosphate-dependent aminotransferase -
  EL071_RS03785 (NCTC8184_00732) recO 710166..710927 (+) 762 WP_001266273.1 DNA repair protein RecO Machinery gene
  EL071_RS03790 (NCTC8184_00733) - 710990..711868 (+) 879 WP_000420123.1 type II CAAX endopeptidase family protein -
  EL071_RS03795 (NCTC8184_00734) plsX 711946..712938 (+) 993 WP_000717414.1 phosphate acyltransferase PlsX -
  EL071_RS03800 (NCTC8184_00735) - 712949..713188 (+) 240 WP_000085641.1 phosphopantetheine-binding protein -
  EL071_RS03805 (NCTC8184_00736) purC 713312..714016 (+) 705 WP_000184490.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29656.05 Da        Isoelectric Point: 6.2989

>NTDB_id=999367 EL071_RS03785 WP_001266273.1 710166..710927(+) (recO) [Streptococcus agalactiae strain NCTC8184]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
TNSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=999367 EL071_RS03785 WP_001266273.1 710166..710927(+) (recO) [Streptococcus agalactiae strain NCTC8184]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGACGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGAATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ACCAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTCCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.228

97.233

0.625