Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EL141_RS21060 Genome accession   NZ_LR134248
Coordinates   4344127..4345152 (+) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain NCTC10537     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4339127..4350152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL141_RS21035 (NCTC10537_04256) metJ 4339564..4339881 (+) 318 WP_000852812.1 met regulon transcriptional regulator MetJ -
  EL141_RS21040 (NCTC10537_04257) yiiX 4340065..4340673 (+) 609 WP_000797341.1 YiiX family permuted papain-like enzyme -
  EL141_RS21045 (NCTC10537_04258) - 4340680..4341303 (+) 624 WP_000720774.1 TIGR02117 family protein -
  EL141_RS21050 (NCTC10537_04259) rpmE 4341358..4341570 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  EL141_RS21055 (NCTC10537_04260) priA 4341773..4343971 (+) 2199 WP_001301269.1 primosomal protein N' Machinery gene
  EL141_RS21060 (NCTC10537_04261) cytR 4344127..4345152 (+) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  EL141_RS21065 (NCTC10537_04262) ftsN 4345244..4346203 (+) 960 WP_000068828.1 cell division protein FtsN -
  EL141_RS21070 (NCTC10537_04263) hslV 4346296..4346826 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  EL141_RS21075 (NCTC10537_04264) hslU 4346836..4348167 (+) 1332 WP_001293341.1 HslU--HslV peptidase ATPase subunit -
  EL141_RS21080 (NCTC10537_04265) menA 4348234..4349160 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  EL141_RS21085 (NCTC10537_04266) rraA 4349253..4349738 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  EL141_RS21090 (NCTC10537_04267) zapB 4349823..4350068 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=999326 EL141_RS21060 WP_000644904.1 4344127..4345152(+) (cytR) [Escherichia coli strain NCTC10537]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=999326 EL141_RS21060 WP_000644904.1 4344127..4345152(+) (cytR) [Escherichia coli strain NCTC10537]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628