Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ABD409_RS09410 Genome accession   NZ_CP155741
Coordinates   1882778..1883491 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   A0A9X5LXW4
Organism   Streptococcus pyogenes strain 400/03     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1877778..1888491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD409_RS09400 (ABD409_09375) treC 1878848..1880476 (-) 1629 WP_023612559.1 alpha,alpha-phosphotrehalase -
  ABD409_RS09405 (ABD409_09380) treP 1880543..1882567 (-) 2025 WP_023612582.1 PTS system trehalose-specific EIIBC component -
  ABD409_RS09410 (ABD409_09385) treR 1882778..1883491 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  ABD409_RS09415 (ABD409_09390) - 1883771..1884037 (-) 267 WP_076637095.1 helix-turn-helix domain-containing protein -
  ABD409_RS09420 (ABD409_09395) - 1884295..1885152 (+) 858 WP_032465608.1 VOC family protein -
  ABD409_RS09425 (ABD409_09400) yaaA 1885194..1885925 (+) 732 WP_023612602.1 peroxide stress protein YaaA -
  ABD409_RS09430 (ABD409_09405) nrdG 1886099..1886713 (-) 615 WP_021775544.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  ABD409_RS09435 (ABD409_09410) - 1886728..1887222 (-) 495 WP_011055085.1 GNAT family N-acetyltransferase -
  ABD409_RS09440 (ABD409_09415) - 1887231..1888166 (-) 936 WP_010922750.1 Gfo/Idh/MocA family protein -
  ABD409_RS09445 (ABD409_09420) - 1888195..1888341 (-) 147 WP_011106921.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=999280 ABD409_RS09410 WP_002982243.1 1882778..1883491(+) (treR) [Streptococcus pyogenes strain 400/03]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=999280 ABD409_RS09410 WP_002982243.1 1882778..1883491(+) (treR) [Streptococcus pyogenes strain 400/03]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment