Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ABD409_RS07895 Genome accession   NZ_CP155741
Coordinates   1551921..1552646 (-) Length   241 a.a.
NCBI ID   WP_023611908.1    Uniprot ID   A0A5S4TEK9
Organism   Streptococcus pyogenes strain 400/03     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1546921..1557646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD409_RS07860 (ABD409_07835) - 1547055..1547438 (+) 384 WP_002988673.1 ImmA/IrrE family metallo-endopeptidase -
  ABD409_RS07865 (ABD409_07840) - 1547449..1548000 (+) 552 WP_002988670.1 hypothetical protein -
  ABD409_RS07870 (ABD409_07845) - 1548117..1549196 (+) 1080 WP_002988667.1 site-specific integrase -
  ABD409_RS07880 (ABD409_07855) trmB 1549394..1550029 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ABD409_RS07885 (ABD409_07860) ccrZ 1550029..1550820 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  ABD409_RS07890 (ABD409_07865) - 1550884..1551918 (-) 1035 WP_023611934.1 ABC transporter permease -
  ABD409_RS07895 (ABD409_07870) pptA 1551921..1552646 (-) 726 WP_023611908.1 ABC transporter ATP-binding protein Regulator
  ABD409_RS07900 (ABD409_07875) - 1552718..1553137 (+) 420 WP_023611931.1 HIT family protein -
  ABD409_RS07905 (ABD409_07880) - 1553134..1553490 (+) 357 WP_014407784.1 hypothetical protein -
  ABD409_RS07910 (ABD409_07885) - 1553601..1554884 (-) 1284 WP_023611938.1 LCP family protein -
  ABD409_RS07915 (ABD409_07890) - 1554893..1555417 (-) 525 WP_023611919.1 GNAT family N-acetyltransferase -
  ABD409_RS07920 (ABD409_07895) tsaE 1555392..1555853 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ABD409_RS07925 (ABD409_07900) - 1556007..1557467 (-) 1461 WP_023611933.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26704.78 Da        Isoelectric Point: 4.4883

>NTDB_id=999274 ABD409_RS07895 WP_023611908.1 1551921..1552646(-) (pptA) [Streptococcus pyogenes strain 400/03]
MLNIKNLTGGYYNIPVLNDVSFSVDNGELVGLIGLNGAGKSTTINEIIGFLKPYQGSISIDGLTLAENAVAYRQKIGFIP
ETPSLYEELTLSEHINTVAMAYDIDLEVAQKRAQPFLEMFRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEVEKAKGKSILMSTHVLDSAERMCDRFVILHHGQVRAQGTLADLQEAFGDRSASLNDIYLALTKE
D

Nucleotide


Download         Length: 726 bp        

>NTDB_id=999274 ABD409_RS07895 WP_023611908.1 1551921..1552646(-) (pptA) [Streptococcus pyogenes strain 400/03]
ATGTTAAACATTAAAAATCTAACAGGAGGATATTACAATATCCCTGTTTTAAACGATGTCTCATTTTCTGTAGACAATGG
AGAGTTAGTCGGTTTGATCGGGCTAAATGGTGCTGGAAAGTCAACAACTATCAACGAAATTATTGGCTTTTTGAAGCCTT
ATCAAGGAAGTATTTCTATTGATGGTTTAACTCTAGCAGAAAATGCAGTTGCCTACCGTCAAAAAATAGGTTTTATCCCA
GAAACTCCTAGTCTCTATGAAGAATTGACCTTATCAGAGCATATCAACACCGTAGCTATGGCTTATGATATCGACTTAGA
AGTGGCACAAAAACGAGCACAACCTTTCTTGGAAATGTTTCGTTTAACTGACAAACTTGAATGGTTTCCTGTCAATTTTT
CTAAAGGGATGAAACAAAAAGTCATGATTATTTGTGCCTTTGTCATTGATCCAAGTCTATTTATTCTTGATGAACCATTC
TTAGGGTTAGACCCTTTAGCTATTTCAGACTTAATCCAAACGCTAGAAGTCGAAAAAGCAAAAGGAAAATCTATTTTGAT
GAGTACACATGTTTTGGACTCTGCTGAAAGAATGTGTGATCGTTTTGTGATTTTGCATCATGGACAAGTTCGTGCCCAAG
GAACTCTTGCTGACTTGCAAGAAGCTTTTGGTGACCGTTCAGCGAGCTTAAATGATATCTATCTTGCATTAACAAAAGAG
GATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4TEK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.803

99.17

0.722
  pptA Streptococcus thermophilus LMD-9

71.967

99.17

0.714

Multiple sequence alignment