Detailed information NTG0999232

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: EL149_RS19615
• Genome accession: NZ_LR134247
• Coordinates: 3900368..3900844 (+)
• Length: 158 a.a.
• NCBI ID: WP_000811693.1
• Uniprot ID: A0AA91EE93
• Organism: Escherichia coli strain NCTC9040
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3895368..3905844

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL149_RS19575 (NCTC9040_03977)	-	3895576..3896439 (+)	864	WP_001065555.1	GTPase family protein	-
EL149_RS19580 (NCTC9040_03978)	-	3896531..3897352 (+)	822	WP_000197387.1	DUF932 domain-containing protein	-
EL149_RS19585 (NCTC9040_03979)	yfjR	3897569..3898270 (+)	702	WP_000189411.1	WYL domain-containing protein	-
EL149_RS19590 (NCTC9040_03980)	ypjK	3898311..3898547 (+)	237	WP_001144031.1	protein YpjK	-
EL149_RS19595 (NCTC9040_03981)	yfjS	3898547..3898990 (+)	444	WP_000649865.1	YfjS/YafY family lipoprotein	-
EL149_RS19600 (NCTC9040_03982)	ykfB	3899013..3899480 (+)	468	WP_001385283.1	protein YkfB	-
EL149_RS19605 (NCTC9040_03983)	ykfF	3899557..3899796 (+)	240	WP_000194654.1	DUF905 family protein	-
EL149_RS19610 (NCTC9040_03984)	-	3899894..3900352 (+)	459	WP_000211838.1	antirestriction protein	-
EL149_RS19615 (NCTC9040_03985)	radC	3900368..3900844 (+)	477	WP_000811693.1	RadC family protein	Machinery gene
EL149_RS19620 (NCTC9040_03986)	-	3900853..3901074 (+)	222	WP_126325800.1	DUF987 domain-containing protein	-
EL149_RS19625 (NCTC9040_03987)	yafW	3901093..3901410 (+)	318	WP_000070396.1	type IV toxin-antitoxin system antitoxin YafW	-
EL149_RS19630 (NCTC9040_03988)	ykfI	3901431..3901772 (+)	342	WP_000854680.1	type IV toxin-antitoxin system toxin YkfI	-
EL149_RS19635 (NCTC9040_03990)	-	3902371..3902730 (+)	360	WP_001350215.1	hypothetical protein	-
EL149_RS19640 (NCTC9040_03991)	-	3902723..3903265 (-)	543	WP_000284450.1	plasmid pRiA4b ORF-3 family protein	-
EL149_RS25690 (NCTC9040_03992)	-	3903386..3903571 (-)	186	WP_000188903.1	hypothetical protein	-
EL149_RS19650 (NCTC9040_03993)	-	3903869..3904150 (-)	282	WP_000617443.1	PerC family transcriptional regulator	-
EL149_RS19655 (NCTC9040_03994)	-	3904422..3904865 (+)	444	WP_024174049.1	hypothetical protein	-
EL149_RS19660 (NCTC9040_03995)	-	3904945..3905166 (+)	222	WP_000678608.1	hypothetical protein	-

Sequence

Protein

• Length: 158 a.a.
• Molecular weight: 18098.78 Da
• Isoelectric Point: 8.7508

>NTDB_id=999232 EL149_RS19615 WP_000811693.1 3900368..3900844(+) (radC) [Escherichia coli strain NCTC9040]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide

• Length: 477 bp

>NTDB_id=999232 EL149_RS19615 WP_000811693.1 3900368..3900844(+) (radC) [Escherichia coli strain NCTC9040]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (38-157)

3D structure

• AlphaFold DB: A0AA91EE93

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	57.692	65.823	0.38