Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ABD406_RS02350 Genome accession   NZ_CP155738
Coordinates   440655..441464 (+) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1510/08     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 435655..446464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD406_RS02330 (ABD406_02315) - 436097..437344 (+) 1248 WP_023612155.1 AMP-binding protein -
  ABD406_RS02335 (ABD406_02320) - 437400..438434 (+) 1035 WP_011284595.1 DUF3114 domain-containing protein -
  ABD406_RS02340 (ABD406_02325) vicR 438596..439306 (+) 711 WP_023612167.1 response regulator YycF Regulator
  ABD406_RS02345 (ABD406_02330) vicK 439299..440651 (+) 1353 WP_023078748.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ABD406_RS02350 (ABD406_02335) vicX 440655..441464 (+) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  ABD406_RS02355 (ABD406_02340) rnc 441895..442587 (+) 693 WP_002990670.1 ribonuclease III -
  ABD406_RS02360 (ABD406_02345) smc 442588..446127 (+) 3540 WP_023612168.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=999078 ABD406_RS02350 WP_002985641.1 440655..441464(+) (vicX) [Streptococcus pyogenes strain 1510/08]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=999078 ABD406_RS02350 WP_002985641.1 440655..441464(+) (vicX) [Streptococcus pyogenes strain 1510/08]
ATGAATGAGAGTGGTTTTAAATACAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment