Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EL138_RS04080 Genome accession   NZ_LR134237
Coordinates   839915..840391 (-) Length   158 a.a.
NCBI ID   WP_021511973.1    Uniprot ID   -
Organism   Escherichia coli strain NCTC9022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 834915..845391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL138_RS04045 - 836615..836785 (-) 171 Protein_795 IS110 family transposase -
  EL138_RS04050 (NCTC9022_00817) - 837127..837969 (-) 843 WP_020246044.1 DUF4942 domain-containing protein -
  EL138_RS04055 (NCTC9022_00818) - 838054..838251 (-) 198 WP_000839268.1 DUF957 domain-containing protein -
  EL138_RS04060 (NCTC9022_00819) - 838269..838757 (-) 489 WP_000761688.1 DUF5983 family protein -
  EL138_RS04065 (NCTC9022_00820) - 838754..839131 (-) 378 WP_000854738.1 TA system toxin CbtA family protein -
  EL138_RS04070 - 839178..839551 (-) 374 Protein_800 type IV toxin-antitoxin system YeeU family antitoxin -
  EL138_RS04075 (NCTC9022_00822) - 839631..839852 (-) 222 WP_000692309.1 DUF987 domain-containing protein -
  EL138_RS04080 (NCTC9022_00823) radC 839915..840391 (-) 477 WP_021511973.1 RadC family protein Machinery gene
  EL138_RS04085 (NCTC9022_00824) - 840407..840886 (-) 480 WP_000844100.1 antirestriction protein -
  EL138_RS04090 (NCTC9022_00825) - 840968..841786 (-) 819 WP_021511972.1 DUF932 domain-containing protein -
  EL138_RS04095 (NCTC9022_00826) - 841876..842109 (-) 234 WP_001278290.1 DUF905 family protein -
  EL138_RS04100 (NCTC9022_00827) - 842115..842792 (-) 678 WP_001097314.1 hypothetical protein -
  EL138_RS04105 (NCTC9022_00828) - 842940..843620 (-) 681 WP_001282919.1 WYL domain-containing protein -
  EL138_RS04110 (NCTC9022_00830) - 843823..844707 (-) 885 WP_000010377.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17641.24 Da        Isoelectric Point: 7.2517

>NTDB_id=999032 EL138_RS04080 WP_021511973.1 839915..840391(-) (radC) [Escherichia coli strain NCTC9022]
MQQLSFLPGSMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=999032 EL138_RS04080 WP_021511973.1 839915..840391(-) (radC) [Escherichia coli strain NCTC9022]
ATGCAACAGCTTTCCTTTCTGCCCGGATCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAGCCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGGCTTATCACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment