Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ABD408_RS00630 Genome accession   NZ_CP155735
Coordinates   99370..100323 (+) Length   317 a.a.
NCBI ID   WP_002987790.1    Uniprot ID   A0A5S4TCX5
Organism   Streptococcus pyogenes strain 4958/15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 94370..105323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD408_RS00590 (ABD408_00580) - 95197..95562 (+) 366 WP_002986560.1 DUF1033 family protein -
  ABD408_RS00595 (ABD408_00585) comYA 95655..96593 (+) 939 WP_023612548.1 competence type IV pilus ATPase ComGA Machinery gene
  ABD408_RS00600 (ABD408_00590) comYB 96529..97563 (+) 1035 WP_229363300.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABD408_RS00605 (ABD408_00595) comYC 97565..97891 (+) 327 WP_032465607.1 competence type IV pilus major pilin ComGC Machinery gene
  ABD408_RS00610 (ABD408_00600) comGD 97866..98294 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  ABD408_RS00615 (ABD408_00605) comGE 98251..98535 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE -
  ABD408_RS00620 (ABD408_00610) comYF 98528..98962 (+) 435 WP_023612536.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABD408_RS00625 (ABD408_00615) comGG 98946..99272 (+) 327 WP_002992739.1 competence type IV pilus minor pilin ComGG -
  ABD408_RS00630 (ABD408_00620) comYH 99370..100323 (+) 954 WP_002987790.1 class I SAM-dependent methyltransferase Machinery gene
  ABD408_RS00635 (ABD408_00625) - 100382..101578 (+) 1197 WP_023612537.1 acetate kinase -
  ABD408_RS00640 (ABD408_00630) - 101765..102073 (+) 309 WP_032465606.1 hypothetical protein -
  ABD408_RS00645 (ABD408_00635) proC 102156..102926 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  ABD408_RS00650 (ABD408_00640) pepA 102974..104041 (-) 1068 WP_023612538.1 glutamyl aminopeptidase -
  ABD408_RS00655 (ABD408_00645) - 104506..104790 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  ABD408_RS00660 (ABD408_00650) - 104787..105104 (+) 318 WP_002992751.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35985.08 Da        Isoelectric Point: 4.7205

>NTDB_id=998887 ABD408_RS00630 WP_002987790.1 99370..100323(+) (comYH) [Streptococcus pyogenes strain 4958/15]
MTFEKIEEAYQLLLENCQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVAQNSDKLKALCLTKEEWRKAYQFLFIKAAQT
EQLQANHQFTPDAIGFILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSS
AHFIQEDAVRPQLLKESDIVISDLPVGYYPNDDIAKRYKVASSDKHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSPQ
SQLLKQWLKDYAQVVALITLPDSIFGHPSNAKSIIVLQKQTDHPMETFVYPIRDLKLAENIHDFMENFKKWKLSNVN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=998887 ABD408_RS00630 WP_002987790.1 99370..100323(+) (comYH) [Streptococcus pyogenes strain 4958/15]
ATGACTTTTGAAAAAATTGAAGAAGCTTATCAGCTGCTCTTAGAGAACTGTCAACTAATTGAAAATGATCTAAAAACACA
TATATACGATGCCATTGTTGAACAAAACTCCTTTTATTTAGGGGCTGAGGGAGCTAGTCCTCAAGTTGCTCAAAATAGTG
ATAAACTGAAAGCCTTGTGCCTGACAAAAGAAGAATGGCGTAAGGCCTACCAGTTTCTTTTTATTAAGGCAGCTCAGACT
GAGCAACTCCAAGCCAACCATCAGTTCACACCAGATGCTATTGGCTTCATTCTGCTGTATCTTTTGGAACAATTGAGTGA
TAAAGATAGCTTAGAGGTACTTGAGATTGGAAGTGGAACAGGGAACCTAGCTCAAACCCTTCTCAACAACACGAGCAAGA
GCCTTGATTATGTAGGGATTGAACTTGATGATCTCTTGATTGATCTGTCAGCCAGTATTGCTGAAATAATGGATTCTTCA
GCTCATTTTATTCAAGAAGATGCGGTAAGGCCTCAATTACTAAAAGAAAGTGACATTGTCATCAGTGACTTACCAGTTGG
TTATTATCCTAACGATGATATTGCCAAACGGTACAAGGTGGCTAGTTCAGATAAGCATACCTATGCCCATCATTTATTAA
TGGAACAGTCTTTAAAATACTTGAAAAAAGACGGTTTTGCGATTTTTCTGGCACCAGTCAATTTATTGACGAGCCCTCAG
AGCCAGTTATTGAAACAGTGGTTAAAAGATTATGCTCAGGTGGTGGCCTTGATTACACTACCAGATTCTATTTTTGGTCA
TCCCTCAAATGCCAAGTCCATTATTGTCTTACAAAAACAAACAGACCACCCAATGGAAACCTTTGTCTATCCAATTCGGG
ATTTGAAGCTTGCAGAGAATATTCATGATTTTATGGAAAATTTCAAAAAATGGAAACTGAGTAATGTCAATTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4TCX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

66.139

99.685

0.659
  comYH Streptococcus mutans UA140

65.823

99.685

0.656

Multiple sequence alignment