Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   M036_RS00325 Genome accession   NZ_CP005997
Coordinates   59911..60141 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis TO-A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54911..65141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M036_RS00290 (M036_00285) ridA 55076..55453 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  M036_RS00295 (M036_00290) spoVG 55647..55940 (+) 294 WP_003218346.1 septation regulator SpoVG -
  M036_RS00305 (M036_00300) glmU 56133..57503 (+) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  M036_RS00310 (M036_00305) prsS 57526..58479 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  M036_RS00315 (M036_00310) rplYB 58564..59178 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  M036_RS00320 (M036_00315) pth 59285..59851 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  M036_RS00325 (M036_00320) subA/fin 59911..60141 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  M036_RS00330 (M036_00325) mfd 60211..63744 (+) 3534 WP_003226723.1 transcription-repair coupling factor -
  M036_RS00335 (M036_00330) spoVT 63880..64416 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=99873 M036_RS00325 WP_003243417.1 59911..60141(+) (subA/fin) [Bacillus subtilis TO-A]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=99873 M036_RS00325 WP_003243417.1 59911..60141(+) (subA/fin) [Bacillus subtilis TO-A]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment