Detailed information NTG0998710

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EL118_RS05465
• Genome accession: NZ_LR134228
• Coordinates: 1127333..1128325 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain NCTC9699
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1122333..1133325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL118_RS05435 (NCTC9699_01082)	nlpD	1122860..1123933 (+)	1074	WP_349813557.1	murein hydrolase activator NlpD	-
EL118_RS05440 (NCTC9699_01083)	-	1124023..1125072 (+)	1050	Protein_1063	IS1202-like element ISEsa1 family transposase	-
EL118_RS24475	-	1125193..1125342 (+)	150	WP_180302674.1	protein YdfW	-
EL118_RS05445 (NCTC9699_01084)	-	1125779..1126111 (-)	333	WP_001317460.1	FlxA-like family protein	-
EL118_RS05450	ydfV	1126314..1126619 (-)	306	WP_001326990.1	protein YdfV	-
EL118_RS05455 (NCTC9699_01085)	relB	1126644..1126883 (+)	240	WP_000534858.1	type II toxin-antitoxin system antitoxin RelB	-
EL118_RS05460 (NCTC9699_01086)	relE	1126883..1127170 (+)	288	WP_000323025.1	type II toxin-antitoxin system mRNA interferase RelE	-
EL118_RS05465 (NCTC9699_01087)	rpoS	1127333..1128325 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EL118_RS05470 (NCTC9699_01088)	ygbN	1128419..1129783 (-)	1365	WP_000104429.1	GntP family transporter	-
EL118_RS05475 (NCTC9699_01089)	ygbM	1129872..1130648 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
EL118_RS05480 (NCTC9699_01090)	ygbL	1130653..1131291 (-)	639	WP_001278994.1	aldolase	-
EL118_RS05485 (NCTC9699_01091)	otnK	1131288..1132550 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=998710 EL118_RS05465 WP_000081550.1 1127333..1128325(+) (rpoS) [Escherichia coli strain NCTC9699]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=998710 EL118_RS05465 WP_000081550.1 1127333..1128325(+) (rpoS) [Escherichia coli strain NCTC9699]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715