Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EL113_RS23475 Genome accession   NZ_LR134222
Coordinates   4756145..4757170 (+) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain NCTC11129     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4751145..4762170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL113_RS23440 (NCTC11129_04670) - 4752009..4752572 (+) 564 WP_225877543.1 EAL domain-containing protein -
  EL113_RS23445 (NCTC11129_04671) - 4752626..4753381 (-) 756 WP_072134454.1 hypothetical protein -
  EL113_RS23450 - 4753460..4754016 (-) 557 Protein_4550 Ref family protein -
  EL113_RS23455 (NCTC11129_04673) - 4754258..4754569 (-) 312 WP_001224247.1 hypothetical protein -
  EL113_RS23460 (NCTC11129_04674) - 4754620..4755651 (-) 1032 WP_000067528.1 site-specific integrase -
  EL113_RS23465 (NCTC11129_04675) - 4755659..4755880 (-) 222 WP_000542335.1 hypothetical protein -
  EL113_RS23475 (NCTC11129_04676) cytR 4756145..4757170 (+) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  EL113_RS23480 (NCTC11129_04677) ftsN 4757262..4758221 (+) 960 WP_000068834.1 cell division protein FtsN -
  EL113_RS23485 (NCTC11129_04678) hslV 4758314..4758844 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  EL113_RS23490 (NCTC11129_04679) hslU 4758854..4760185 (+) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  EL113_RS23495 (NCTC11129_04680) menA 4760252..4761178 (+) 927 WP_001307494.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  EL113_RS23500 (NCTC11129_04681) rraA 4761271..4761756 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  EL113_RS23505 (NCTC11129_04682) zapB 4761841..4762086 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=998600 EL113_RS23475 WP_000644904.1 4756145..4757170(+) (cytR) [Escherichia coli strain NCTC11129]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=998600 EL113_RS23475 WP_000644904.1 4756145..4757170(+) (cytR) [Escherichia coli strain NCTC11129]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTATCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628