Detailed information NTG0998438

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: EL103_RS21315
• Genome accession: NZ_LR134216
• Coordinates: 4405662..4406687 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644898.1
• Uniprot ID: -
• Organism: Escherichia coli strain NCTC10973
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4400662..4411687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL103_RS21295 (NCTC10973_04256)	metJ	4401723..4402040 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
EL103_RS21300 (NCTC10973_04257)	yiiX	4402224..4402832 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
EL103_RS21305 (NCTC10973_04258)	rpmE	4402893..4403105 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
EL103_RS21310 (NCTC10973_04259)	priA	4403308..4405506 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
EL103_RS21315 (NCTC10973_04260)	cytR	4405662..4406687 (+)	1026	WP_000644898.1	DNA-binding transcriptional regulator CytR	Regulator
EL103_RS21320 (NCTC10973_04261)	ftsN	4406779..4407738 (+)	960	WP_000068828.1	cell division protein FtsN	-
EL103_RS21325 (NCTC10973_04262)	hslV	4407831..4408361 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
EL103_RS21330 (NCTC10973_04263)	hslU	4408371..4409702 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
EL103_RS21335 (NCTC10973_04264)	menA	4409769..4410695 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
EL103_RS21340 (NCTC10973_04265)	rraA	4410788..4411273 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
EL103_RS21345 (NCTC10973_04266)	zapB	4411358..4411603 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37877.82 Da
• Isoelectric Point: 6.1629

>NTDB_id=998438 EL103_RS21315 WP_000644898.1 4405662..4406687(+) (cytR) [Escherichia coli strain NCTC10973]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCDIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=998438 EL103_RS21315 WP_000644898.1 4405662..4406687(+) (cytR) [Escherichia coli strain NCTC10973]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
ACATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625