Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QMG87_RS05620 Genome accession   NZ_AP027170
Coordinates   1153345..1153974 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 20.1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1148345..1158974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG87_RS05600 (B201_1071) ycbZ 1148747..1150507 (-) 1761 WP_000156528.1 Lon protease family protein -
  QMG87_RS05605 (B201_1072) matP 1150693..1151145 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QMG87_RS05610 (B201_1073) ompA 1151220..1152260 (-) 1041 WP_000750416.1 porin OmpA -
  QMG87_RS05615 (B201_1074) sulA 1152617..1153126 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QMG87_RS05620 (B201_1075) sxy/tfoX 1153345..1153974 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QMG87_RS05625 (B201_1076) yccS 1153937..1156099 (-) 2163 WP_000875023.1 YccS family putative transporter -
  QMG87_RS05630 (B201_1077) yccF 1156109..1156555 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QMG87_RS05635 (B201_1078) helD 1156678..1158732 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=99835 QMG87_RS05620 WP_000839153.1 1153345..1153974(+) (sxy/tfoX) [Escherichia coli strain 20.1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=99835 QMG87_RS05620 WP_000839153.1 1153345..1153974(+) (sxy/tfoX) [Escherichia coli strain 20.1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment