Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   EL020_RS04615 Genome accession   NZ_LR134203
Coordinates   886761..888959 (+) Length   732 a.a.
NCBI ID   WP_061407481.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC11436     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 881761..893959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL020_RS04585 (NCTC11436_00952) - 881778..881954 (-) 177 WP_020916505.1 DUF3042 family protein -
  EL020_RS04590 (NCTC11436_00953) miaA 882142..883041 (+) 900 WP_020916506.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  EL020_RS04595 (NCTC11436_00954) hflX 883131..884369 (+) 1239 WP_126402433.1 GTPase HflX -
  EL020_RS04600 (NCTC11436_00955) - 884362..885000 (+) 639 WP_058813779.1 hypothetical protein -
  EL020_RS04605 (NCTC11436_00956) rnz 885041..885970 (+) 930 WP_020916509.1 ribonuclease Z -
  EL020_RS04610 (NCTC11436_00957) - 885967..886725 (+) 759 WP_020916510.1 SDR family NAD(P)-dependent oxidoreductase -
  EL020_RS04615 (NCTC11436_00958) recJ 886761..888959 (+) 2199 WP_061407481.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  EL020_RS04620 (NCTC11436_00959) bsh 889129..890106 (+) 978 WP_020916512.1 choloylglycine hydrolase -
  EL020_RS04625 (NCTC11436_00960) - 890209..890727 (+) 519 WP_126402434.1 adenine phosphoribosyltransferase -
  EL020_RS04630 (NCTC11436_00961) metA 890835..891779 (+) 945 WP_020916513.1 homoserine O-acetyltransferase MetA -
  EL020_RS04635 (NCTC11436_00962) - 891858..892532 (+) 675 WP_126402435.1 DnaD domain-containing protein -
  EL020_RS04640 (NCTC11436_00963) nth 892532..893182 (+) 651 WP_020916515.1 endonuclease III -

Sequence

Protein


Download         Length: 732 a.a.        Molecular weight: 81986.74 Da        Isoelectric Point: 4.4371

>NTDB_id=998239 EL020_RS04615 WP_061407481.1 886761..888959(+) (recJ) [Streptococcus lutetiensis strain NCTC11436]
MITSKYNWKNIEKEPDDGFFEVTKKENITALASKILYSRGVDNDEKLAQFLSNDLSQLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEMLGAEVQVYLPNRFVDGYGPNESVYKYFIEQQQVSLIITVDNGVAGHEAISYAQ
SQGVDVIVTDHHGLPAELPDAFAIVHPEYPEADYPFRYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEMLKQTERIGLMELMKVSDIDMSDVNEETVGFKIAPQLNALGRLDDPNRAIELLTGFDDEEALSIAQMINAKN
EERKEIVQKIYDEAMGMVDLDKPVQVLAKEGWHPGVLGIVAGRILEHIAQPVIVLNIEDGMAKGSARSIEAINIFHALDD
HRDLFEAFGGHAGAAGMTLPVDNLEQLSQVLCDYIAENDINLAQKKTLIIDEVLDLSEIDLDTVKSLEKIAPFGMDNAKP
VFEIKDLTVKHARTMGQNGTHLKLKIAQGSTAVDLVAFNQGHLVQEFQQAQNLCLAVTLSINKWNGQTTVQLMLEDARVD
GVQLIDIRSKNASLPERVPVLSEDTSASEVVVLDIPDKAEELKSLFVGRQFDAVYFKNHIKRAYYLTGYGTREQFAKLYK
TIYQFPEFDVRYKLKELSHYLNIPDILLVKMIQIFDELDFVTITDGVMVVNKGAEKRSISDSKIYQNLKQEVKFQELMAL
GTPQEIYDWLMN

Nucleotide


Download         Length: 2199 bp        

>NTDB_id=998239 EL020_RS04615 WP_061407481.1 886761..888959(+) (recJ) [Streptococcus lutetiensis strain NCTC11436]
ATGATAACAAGTAAATACAATTGGAAAAATATTGAAAAAGAGCCAGATGATGGCTTTTTTGAAGTGACAAAAAAAGAAAA
TATAACGGCATTAGCCAGCAAAATCCTATACAGTCGTGGCGTTGACAACGACGAAAAACTAGCTCAATTTTTATCGAATG
ATTTGTCACAACTTCACGATCCATATCTTTTGCACGATATGGACAAGGCAGTTGCCCGCATTCGTCAAGCTATTGAAAAT
TATGAACAAATCTTGGTTTATGGTGACTATGATGCCGACGGGATGACCAGCGCTAGTATCATGAAAGAAGCGTTGGAAAT
GCTTGGGGCTGAGGTTCAAGTCTATCTTCCTAACCGATTTGTTGATGGTTATGGACCAAATGAATCGGTTTATAAGTATT
TCATCGAGCAACAACAGGTTTCTTTGATTATTACGGTGGATAATGGCGTAGCTGGACATGAAGCTATTAGCTATGCACAA
AGTCAAGGAGTAGATGTCATTGTTACTGACCACCATGGCTTACCAGCAGAGCTTCCAGACGCATTTGCCATTGTACATCC
AGAGTATCCAGAAGCTGACTATCCTTTTAGATATTTAGCAGGATGTGGTGTAGCCTTCAAAGTGGCTTGTGCCCTATTAG
AATCCATCCCAACCGAAATGTTAGACTTAGTTGCTATCGGAACGATTGCCGATATGGTTAGTCTAACAGATGAAAATCGT
ATCATGGTCAAGGTTGGGCTTGAAATGCTCAAGCAGACCGAACGCATTGGTCTCATGGAGCTTATGAAAGTATCTGATAT
TGACATGTCAGATGTTAATGAGGAAACTGTTGGGTTTAAAATTGCACCGCAGCTAAATGCTCTTGGTCGTCTAGATGATC
CAAATCGAGCTATTGAATTATTGACTGGTTTTGATGATGAAGAAGCGCTAAGTATTGCGCAAATGATTAATGCCAAGAAT
GAAGAACGTAAAGAAATTGTTCAAAAAATTTACGATGAAGCCATGGGCATGGTTGATCTTGACAAGCCTGTGCAGGTGTT
GGCAAAAGAAGGCTGGCATCCAGGTGTTCTAGGAATTGTCGCTGGTCGTATTTTGGAGCACATTGCTCAGCCAGTTATTG
TCTTAAACATTGAAGACGGTATGGCAAAAGGCTCTGCTAGAAGTATTGAGGCAATCAATATCTTCCATGCACTTGATGAC
CACCGTGATTTATTTGAAGCTTTTGGTGGACATGCTGGTGCTGCAGGAATGACCTTGCCAGTTGATAACTTAGAGCAATT
GTCACAAGTTTTATGTGATTACATTGCTGAAAATGATATTAATTTAGCTCAGAAAAAGACTTTGATCATTGATGAAGTGC
TGGACTTGTCAGAAATTGATTTGGACACTGTTAAAAGTCTTGAGAAGATCGCACCTTTTGGGATGGATAATGCTAAGCCA
GTCTTTGAAATCAAAGACCTTACCGTTAAACACGCACGTACCATGGGGCAAAATGGCACTCACTTGAAATTAAAAATTGC
TCAAGGAAGTACGGCGGTTGACCTTGTTGCCTTTAACCAAGGTCATTTGGTACAAGAATTCCAGCAAGCGCAGAACCTGT
GCCTTGCCGTTACTTTGTCAATCAACAAATGGAACGGGCAAACCACAGTTCAGTTGATGCTTGAAGACGCGCGTGTTGAC
GGCGTTCAGTTGATTGATATTCGTTCCAAAAATGCCAGTCTTCCTGAACGTGTTCCTGTTTTGAGTGAAGACACCAGTGC
CAGTGAAGTGGTTGTACTAGATATTCCTGATAAGGCTGAAGAACTCAAATCCCTTTTTGTCGGTCGACAATTTGATGCCG
TTTACTTTAAAAATCACATCAAACGAGCTTATTATTTGACTGGCTATGGAACTCGCGAACAATTTGCTAAGTTGTATAAA
ACGATTTATCAATTCCCTGAATTTGATGTTCGTTACAAGCTGAAAGAATTGAGTCATTATCTTAATATTCCTGATATTCT
TTTGGTCAAAATGATTCAAATTTTTGATGAATTGGATTTTGTAACCATCACAGATGGAGTGATGGTCGTCAATAAAGGTG
CTGAGAAACGCAGTATTTCTGATAGTAAAATTTATCAAAATCTTAAGCAAGAAGTGAAATTTCAAGAGCTCATGGCACTT
GGAACGCCACAAGAAATTTATGACTGGTTGATGAACTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-433)

RecJ OB domain (RecJ_OB)

(450-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(582-730)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.3

100

0.678
  recJ Bacillus subtilis subsp. subtilis str. 168

37.935

100

0.402