Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABDZ24_RS24385 Genome accession   NZ_CP155623
Coordinates   4654137..4654460 (+) Length   107 a.a.
NCBI ID   WP_000578881.1    Uniprot ID   A0A1C4ASA2
Organism   Bacillus paramobilis strain N24509     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4649137..4659460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS24370 (ABDZ24_24445) - 4649654..4651021 (-) 1368 WP_000116790.1 aldehyde dehydrogenase -
  ABDZ24_RS24375 (ABDZ24_24450) inhA1 4651193..4653580 (-) 2388 WP_346817524.1 M6 family metalloprotease immune inhibitor InhA1 -
  ABDZ24_RS24380 (ABDZ24_24455) - 4653923..4654057 (+) 135 WP_000276217.1 anti-repressor SinI family protein -
  ABDZ24_RS24385 (ABDZ24_24460) sinR 4654137..4654460 (+) 324 WP_000578881.1 helix-turn-helix domain-containing protein Regulator
  ABDZ24_RS24390 (ABDZ24_24465) calY 4654537..4655130 (-) 594 WP_000053727.1 biofilm matrix protein CalY -
  ABDZ24_RS24395 (ABDZ24_24470) - 4655538..4656317 (-) 780 WP_000917480.1 DUF4047 domain-containing protein -
  ABDZ24_RS24400 (ABDZ24_24475) - 4656474..4657064 (-) 591 WP_000172848.1 TasA family protein -
  ABDZ24_RS24405 (ABDZ24_24480) - 4657127..4657696 (-) 570 WP_000674073.1 signal peptidase I -
  ABDZ24_RS24410 (ABDZ24_24485) - 4657888..4659174 (-) 1287 WP_000247006.1 serine hydrolase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12368.20 Da        Isoelectric Point: 8.5805

>NTDB_id=998143 ABDZ24_RS24385 WP_000578881.1 4654137..4654460(+) (sinR) [Bacillus paramobilis strain N24509]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKHDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=998143 ABDZ24_RS24385 WP_000578881.1 4654137..4654460(+) (sinR) [Bacillus paramobilis strain N24509]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCATTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAGTTTACAAAGTGGAAGCACGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4ASA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment