Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABDZ24_RS23045 Genome accession   NZ_CP155623
Coordinates   4409316..4409918 (+) Length   200 a.a.
NCBI ID   WP_000155592.1    Uniprot ID   A0A0G8BSW4
Organism   Bacillus paramobilis strain N24509     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4404316..4414918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS23000 (ABDZ24_23075) gpsB 4404625..4404963 (-) 339 WP_000622425.1 cell division regulator GpsB -
  ABDZ24_RS23005 (ABDZ24_23080) - 4405061..4405615 (-) 555 WP_098259180.1 DUF1273 domain-containing protein -
  ABDZ24_RS23010 (ABDZ24_23085) - 4405672..4406112 (-) 441 WP_098259181.1 CotD family spore coat protein -
  ABDZ24_RS23015 (ABDZ24_23090) - 4406269..4406769 (-) 501 WP_000487710.1 YppG family protein -
  ABDZ24_RS23020 (ABDZ24_23095) - 4406947..4407138 (+) 192 WP_000242661.1 YppF family protein -
  ABDZ24_RS23025 (ABDZ24_23100) - 4407165..4407509 (-) 345 WP_000875384.1 YppE family protein -
  ABDZ24_RS23030 (ABDZ24_23105) - 4407525..4407767 (-) 243 WP_001252039.1 hypothetical protein -
  ABDZ24_RS23035 (ABDZ24_23110) - 4407853..4408029 (+) 177 WP_080000094.1 phage portal protein -
  ABDZ24_RS23040 (ABDZ24_23115) - 4408187..4409212 (-) 1026 WP_033656307.1 DUF2515 domain-containing protein -
  ABDZ24_RS23045 (ABDZ24_23120) recU 4409316..4409918 (+) 603 WP_000155592.1 Holliday junction resolvase RecU Machinery gene
  ABDZ24_RS23050 (ABDZ24_23125) - 4409985..4412648 (+) 2664 WP_098259183.1 PBP1A family penicillin-binding protein -
  ABDZ24_RS23055 (ABDZ24_23130) - 4412672..4413190 (-) 519 WP_000442663.1 YpoC family protein -
  ABDZ24_RS23060 (ABDZ24_23135) nth 4413194..4413841 (-) 648 WP_346817506.1 endonuclease III -
  ABDZ24_RS23065 (ABDZ24_23140) dnaD 4413857..4414564 (-) 708 WP_000728533.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.61 Da        Isoelectric Point: 9.4277

>NTDB_id=998141 ABDZ24_RS23045 WP_000155592.1 4409316..4409918(+) (recU) [Bacillus paramobilis strain N24509]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=998141 ABDZ24_RS23045 WP_000155592.1 4409316..4409918(+) (recU) [Bacillus paramobilis strain N24509]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTAAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCCACCCCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGGATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCAATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8BSW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment