Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABDZ24_RS10455 Genome accession   NZ_CP155623
Coordinates   1909336..1909770 (+) Length   144 a.a.
NCBI ID   WP_000811507.1    Uniprot ID   -
Organism   Bacillus paramobilis strain N24509     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1904336..1914770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS10435 (ABDZ24_10455) - 1905237..1906400 (-) 1164 WP_000434595.1 aminotransferase A -
  ABDZ24_RS10440 (ABDZ24_10460) - 1906524..1906724 (-) 201 WP_000929285.1 hypothetical protein -
  ABDZ24_RS10445 (ABDZ24_10465) kinB 1907034..1908308 (+) 1275 WP_098258689.1 sporulation sensor histidine kinase KinB -
  ABDZ24_RS10450 (ABDZ24_10470) - 1908347..1909096 (-) 750 WP_000388475.1 DUF3967 domain-containing protein -
  ABDZ24_RS10455 (ABDZ24_10475) nucA/comI 1909336..1909770 (+) 435 WP_000811507.1 DNA-entry nuclease Machinery gene
  ABDZ24_RS10460 (ABDZ24_10480) comJ 1909807..1910196 (+) 390 WP_000424025.1 competence protein ComJ -
  ABDZ24_RS10465 (ABDZ24_10485) metE 1910234..1912522 (-) 2289 WP_098258691.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  ABDZ24_RS10470 (ABDZ24_10490) - 1913193..1913624 (+) 432 WP_000438231.1 NUDIX hydrolase -
  ABDZ24_RS10475 (ABDZ24_10495) - 1913812..1914369 (-) 558 WP_000062069.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15998.32 Da        Isoelectric Point: 8.4331

>NTDB_id=998132 ABDZ24_RS10455 WP_000811507.1 1909336..1909770(+) (nucA/comI) [Bacillus paramobilis strain N24509]
MKQLKGIIISIIAILSIVVAVYEVLVPEETSTKKTNAYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=998132 ABDZ24_RS10455 WP_000811507.1 1909336..1909770(+) (nucA/comI) [Bacillus paramobilis strain N24509]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCGGTTTATGAAGTACTTGTTCC
AGAGGAAACAAGTACCAAAAAAACAAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGAGCGATATCCAGAGACAGGGA
AACATATTACGGATGCTATAAAAGAAGGACATTCAGAAGTTTGTACAATCGACCGTGGTGGTGCTGCGGATAGAAGAAAA
TTATCGTTAGCTCCATACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCAATGTGTAAAGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCAGATAACCGCGGGGCAGGGTCTTGGGTAGGAAATAAGTTAGATAAATACC
CAGATGGTACGCGTGTGAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

70.796

78.472

0.556

Multiple sequence alignment