Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ABDZ24_RS08510 Genome accession   NZ_CP155623
Coordinates   1563050..1565386 (+) Length   778 a.a.
NCBI ID   WP_048541427.1    Uniprot ID   -
Organism   Bacillus paramobilis strain N24509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1558050..1570386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS08490 (ABDZ24_08505) - 1559454..1559870 (+) 417 WP_000704116.1 Rrf2 family transcriptional regulator -
  ABDZ24_RS08495 (ABDZ24_08510) - 1559906..1561051 (+) 1146 WP_098258453.1 cysteine desulfurase family protein -
  ABDZ24_RS08500 (ABDZ24_08515) mnmA 1561068..1562183 (+) 1116 WP_001038022.1 tRNA 2-thiouridine(34) synthase MnmA -
  ABDZ24_RS08505 (ABDZ24_08520) - 1562294..1562953 (+) 660 WP_120450893.1 tetratricopeptide repeat protein -
  ABDZ24_RS08510 (ABDZ24_08525) recD2 1563050..1565386 (+) 2337 WP_048541427.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ABDZ24_RS08515 (ABDZ24_08530) - 1565514..1565702 (+) 189 WP_000469281.1 hypothetical protein -
  ABDZ24_RS08520 (ABDZ24_08535) - 1565721..1565849 (+) 129 WP_001053553.1 YrzQ family protein -
  ABDZ24_RS08525 (ABDZ24_08540) - 1565885..1566097 (-) 213 WP_000242555.1 hypothetical protein -
  ABDZ24_RS08530 (ABDZ24_08545) - 1566274..1567341 (+) 1068 WP_346817798.1 AI-2E family transporter -
  ABDZ24_RS08535 (ABDZ24_08550) - 1567380..1567724 (-) 345 WP_098258451.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87316.82 Da        Isoelectric Point: 5.3981

>NTDB_id=998126 ABDZ24_RS08510 WP_048541427.1 1563050..1565386(+) (recD2) [Bacillus paramobilis strain N24509]
MGNQHAMDLFEEDKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRALGISGNHNDRVRAGCFYTLENVS
LQLGHVYMGKNQLVRETMSLLNNQEGRVTEEDIVACVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGQIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLANRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=998126 ABDZ24_RS08510 WP_048541427.1 1563050..1565386(+) (recD2) [Bacillus paramobilis strain N24509]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGATAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAGACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTATTTACATTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACATTTAAGAAAGAATTGCCGCAAACAAAAGCTGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGATCATCTTGGGGAACATGCCATCTCTAAAATTATGGATG
ATCCGGATGCGTTAAATGGTGTTGTCAATAAGCAAAAAGCTCAAGAAATATATGAGACAATTGTTGAACATCAAGGACTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAGCTTATTGAAGAAGTGGACGGGATTGGATTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGTATATCGGGTAATCATAATGACCGTGTACGTGCGGGTTGTTTTTATACGTTAGAGAATGTTTCA
TTGCAACTTGGTCATGTTTATATGGGGAAAAATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACCGAGGAAGACATTGTAGCTTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTTATCATAGAAGAAGAACGAGTGT
ATTTAGCATCGTTATTCTACTCAGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAGGAGGAAACACCCTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTCAAATTGAAGAACAACTGAATGTACAGTATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGACGATAATCCATTTCCGATA
TTATTAACGGCCCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACCCCAGAAGGGTCTTTCCAGCGTAATGAAACGGATCCGGTACAAGGGAAATTGCTTATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAATCATTGCCGACTAACATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAATTACCATCTGTAGGACCTGGACAAGTGTTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTGAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCTGTTATTCAACTCGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTACTGGCCCCGATGTATCGTGGCCCTGCCGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTACTGCAACTCGTTAATCAACCGGAGAGTCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAACAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAC
AAAGCCAGACTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAATCGCAAGGTAGTGAGTTTCCGATTGTGA
TTATGCCGATAGTGAAAAGTTACAATCGTATGTTACGTCGTAATTTAATTTACACTGGTATTACAAGAAGTAAAAAGTTC
CTCATTATTTGCGGGGAGGAAGCAGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
GAATCGTTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577

Multiple sequence alignment